# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	1.999	d.129.3.2	41321
1mhnA	59	3.832	b.34.9.1	84964
1r7aA	504	4.439	b.71.1.1,c.1.8.1	97192,97193
2qqrA	118	4.949		
1qwdA	177	5.850	b.60.1.1	96471
2bkdN	134	6.218		
2r55A	231	13.14		
1jj2B	337	13.28	b.43.3.2	63086
2f2lX	167	16.20	d.118.1.1	132844
1wgsA	133	17.57	b.34.13.3	114622
2hqxA	246	19.38	b.34.9.1	136675
1nmeB	92	21.88		
2j01E	206	22.28		
2dkoB	103	22.41		
1edgA	380	23.16	c.1.8.3	28807
1gvhA	396	23.65	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1pdqA	72	25.27	b.34.13.2	94590
1qtnB	95	26.14		
1y9lA	115	26.52		
1wznA	252	29.85	c.66.1.43	121525
1louA	101	30.54	d.58.14.1	39323
1xu1R	42	31.28	g.24.1.2	116036
1pfbA	55	33.63	b.34.13.2	94655
1kt6A	183	34.22	b.60.1.1	84466
1ohtA	215	34.40	d.118.1.1	87036
1vp2A	208	34.85	c.51.4.1	113933
3chvA	284	34.87		
2gfaA	119	35.07	b.34.9.1,b.34.9.1	135089,135090
1jfxA	217	35.14	c.1.8.8	62943
2h8gA	267	35.37		
2yrvA	117	35.45		
1q3lA	69	35.91	b.34.13.2	111652
1sc3B	88	36.64		
1oycA	400	38.50	c.1.4.1	28603
1vecA	206	39.06	c.37.1.19	100575
2bjrA	368	39.76	b.169.1.1,b.169.1.1	128628,128629
2psoA	237	42.71		
1kmkA	406	44.69	c.67.1.3	68696
1w7cA	747	48.86		
1mi8A	158	51.48	b.86.1.2	91279
2r6hA	290	52.20		
3besR	250	52.24		
1z9nA	177	52.97		
2gduA	504	53.33	b.71.1.1,c.1.8.1	135032,135033
1zjrA	211	55.10		
2gar	212	55.63		
2jn9A	105	59.19		
1y0bA	197	60.73	c.61.1.1	122476
2hftA	218	62.02	b.1.2.1,b.1.2.1	21951,21952
2f5kA	102	62.66	b.34.13.3	132995
2cmtA	172	63.09		
1cqmA	101	63.39	d.58.14.1	39321
2arcA	164	63.87	b.82.4.1	28148
1pyoB	105	64.37		
3cx5B	352	64.84		
1d2eA	397	65.11	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
2e5yA	133	68.56		
1qstA	160	69.50	d.108.1.1	40804
1zxfA	155	69.93	d.129.3.5	125771
2arhA	203	70.43	d.108.1.9	127197
1vqoB	338	70.58	b.43.3.2	120363
1lla	628	70.72		
1n9eA	787	70.86	b.30.2.1,d.17.2.1,d.17.2.1	91708,91709,91710
1hl9A	449	71.06	b.71.1.3,c.1.8.11	90650,90651
2o0rA	411	77.79		
1pysA	350	80.00	d.104.1.1	40775
1vk1A	242	81.21	d.268.1.2	108634
2ouxA	286	82.95		
1l1qA	186	83.27	c.61.1.1	77653
1fjgQ	105	84.37	b.40.4.5	25352
1g8lA	411	85.81	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
1sxrA	183	87.76	d.118.1.1	106101
1uv4A	293	89.00	b.67.2.1	119705
2e6xA	69	89.12