# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vf8A	377	3.697	c.1.8.5,d.26.3.1	120029,120030
1suuA	312	3.978	b.68.10.1	99006
3c2uA	538	4.797		
1ms9A	648	5.481	b.29.1.15,b.68.1.1	85088,85089
2vgaA	207	6.361		
2eabA	899	6.417		
2jixB	225	7.052		
2bkdN	134	9.616		
1rc6A	261	9.929	b.82.1.11	97287
1z90A	469	10.12	b.81.1.4,c.68.1.5	124732,124733
2hqxA	246	11.02	b.34.9.1	136675
2sliA	679	12.09	b.29.1.9,b.68.1.1	24274,27611
1htyA	1015	12.45	a.8.3.1,b.30.5.6,c.6.2.1	83064,83065,83066
1em2A	229	14.51	d.129.3.2	41321
2eceA	462	17.35		
1bheA	376	17.73	b.80.1.3	28030
1a8dA	452	18.58	b.29.1.6,b.42.4.2	24262,25607
2sli	679	19.10		
2aaa	484	20.30		
2qqrA	118	23.19		
1wp5A	323	24.55	b.68.10.1	114780
2hpwA	233	25.48		
1mhnA	59	25.89	b.34.9.1	84964
2biwA	490	26.37		
3cx5B	352	27.57		
1y9uA	323	31.02	c.94.1.1	116594
1iyeA	309	31.57	e.17.1.1	83786
2hahA	116	31.81		
2htuA	390	31.88		
3sil	379	32.03		
2aaaA	484	32.81	b.71.1.1,c.1.8.1	27777,28764
1hjxA	362	35.54	c.1.8.5,d.26.3.1	83512,83513
2ebnA	289	39.16	c.1.8.5	28990
3bs0A	439	39.41		
1wb0A	445	39.90	c.1.8.5,d.26.3.1	120825,120826
2g9zA	348	41.26		
2ek6A	95	41.89		
1w9pA	433	42.61	c.1.8.5,d.26.3.1	114412,114413
1wgsA	133	43.77	b.34.13.3	114622
2f2lX	167	46.45	d.118.1.1	132844
2cwzA	141	47.45	d.38.1.7	130961
1xw2A	405	47.96	a.102.1.2	122389
3cz8A	319	49.20		
1d8cA	723	50.34	c.1.13.1	29325
1yo8A	634	51.87		
1e6pA	499	52.57	b.72.2.1,c.1.8.5,d.26.3.1	59314,59315,59316
1p22A	435	53.49	a.158.1.1,b.69.4.1	87715,87716
1xdpA	687	55.63	a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4	121896,121897,121898,121899
3bmvA	683	55.75		
1m65A	245	55.81	c.6.3.1	84847
2pzmA	330	57.03		
2gfaA	119	57.63	b.34.9.1,b.34.9.1	135089,135090
2aqpA	164	57.89		
2q16A	219	60.62		
1q32A	544	60.75	d.136.1.3,d.136.1.3	104507,104508
2aprA	325	61.05	b.50.1.2	26819
1z9nA	177	62.04		
1idkA	359	62.27	b.80.1.2	28025
1xfsA	178	62.90	d.129.3.5	109589
1louA	101	65.61	d.58.14.1	39323
1ynfA	458	65.88	d.126.1.7	123723
1go7P	462	67.62	b.80.7.1,d.92.1.6	76245,76246
2py5A	575	67.97		
1hm9A	468	69.12	b.81.1.4,c.68.1.5	65866,65867
2vcyA	344	69.39		
1vffA	423	70.59	c.1.8.4	120033
2fhdA	153	72.66		
1qjvA	342	72.80	b.80.1.5	28035
2bz6H	254	73.01	b.47.1.2	129552
1h09A	338	73.41	b.109.1.1,c.1.8.8	83420,83421
2psoA	237	76.78		
1x7dA	350	78.88	c.2.1.13	114927
1oycA	400	82.29	c.1.4.1	28603
2q18X	293	84.45		
1vp2A	208	85.33	c.51.4.1	113933
3clwA	507	85.47		
1j1nA	492	87.45	c.94.1.1	83978
1xovA	326	88.00	b.34.11.4,c.56.5.6	122206,122207
3bh1A	507	88.50		
1wkyA	464	88.93	b.18.1.31,c.1.8.3	120992,120993
1d2kA	392	88.93	c.1.8.5,d.26.3.1	29008,38442
2v74B	346	89.08		
2nsmA	439	89.81		
2fq6A	415	89.96	c.67.1.3	133939