# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	7.141	d.129.3.2	41321
2bkdN	134	8.050		
1mhnA	59	8.675	b.34.9.1	84964
1r7aA	504	9.584	b.71.1.1,c.1.8.1	97192,97193
2qqrA	118	9.599		
1edgA	380	10.32	c.1.8.3	28807
1y9lA	115	12.77		
1qwdA	177	12.79	b.60.1.1	96471
2dkoB	103	12.95		
1nmeB	92	13.63		
2r55A	231	14.18		
1qtnB	95	19.23		
2f2lX	167	21.62	d.118.1.1	132844
1louA	101	22.77	d.58.14.1	39323
1oycA	400	25.52	c.1.4.1	28603
1jj2B	337	25.78	b.43.3.2	63086
1sc3B	88	27.06		
2hqxA	246	28.72	b.34.9.1	136675
1vp2A	208	29.61	c.51.4.1	113933
1wgsA	133	32.15	b.34.13.3	114622
1xu1R	42	33.22	g.24.1.2	116036
2j01E	206	35.85		
1pyoB	105	37.30		
2hftA	218	40.60	b.1.2.1,b.1.2.1	21951,21952
1cqmA	101	40.65	d.58.14.1	39321
3chvA	284	45.89		
1z1zA	131	46.82	d.323.1.1	124366
1ohtA	215	47.72	d.118.1.1	87036
1zjrA	211	49.85		
2h8gA	267	53.35		
1lla	628	54.59		
1zxfA	155	55.22	d.129.3.5	125771
1hl9A	449	56.52	b.71.1.3,c.1.8.11	90650,90651
1z9nA	177	56.55		
1wznA	252	57.35	c.66.1.43	121525
2fp3A	316	58.77		
2yrvA	117	59.57		
2arcA	164	59.98	b.82.4.1	28148
3besR	250	60.94		
2gfaA	119	61.85	b.34.9.1,b.34.9.1	135089,135090
2bjrA	368	65.00	b.169.1.1,b.169.1.1	128628,128629
2psoA	237	65.12		
1pdqA	72	65.68	b.34.13.2	94590
2r6hA	290	65.90		
1jfxA	217	66.04	c.1.8.8	62943
2nwfA	141	67.65		
2jixB	225	68.56		
1kmkA	406	68.61	c.67.1.3	68696
2eabA	899	70.21		
1gvhA	396	73.89	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1ehsA	48	77.03	g.2.1.1	43998
2aqpA	164	81.85		
1pfbA	55	83.22	b.34.13.2	94655
3cx5B	352	83.87		
2jepA	395	88.06