# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bkdN	134	2.055		
1r7aA	504	4.174	b.71.1.1,c.1.8.1	97192,97193
1em2A	229	4.443	d.129.3.2	41321
2qqrA	118	7.815		
1edgA	380	8.111	c.1.8.3	28807
1mhnA	59	8.693	b.34.9.1	84964
2hqxA	246	13.92	b.34.9.1	136675
2r55A	231	20.22		
1wgsA	133	21.26	b.34.13.3	114622
2r6hA	290	23.07		
2f2lX	167	24.05	d.118.1.1	132844
1jj2B	337	24.54	b.43.3.2	63086
1qwdA	177	25.29	b.60.1.1	96471
2arcA	164	25.37	b.82.4.1	28148
2jixB	225	26.49		
2yrvA	117	30.80		
2dkoB	103	30.98		
1louA	101	31.49	d.58.14.1	39323
1nmeB	92	31.94		
1qtnB	95	34.58		
2j01E	206	35.19		
1vp2A	208	36.54	c.51.4.1	113933
1sc3B	88	37.64		
1wznA	252	37.95	c.66.1.43	121525
2jepA	395	41.76		
1vecA	206	43.26	c.37.1.19	100575
1oycA	400	46.14	c.1.4.1	28603
1z9nA	177	46.66		
1kmkA	406	47.09	c.67.1.3	68696
2gfaA	119	52.65	b.34.9.1,b.34.9.1	135089,135090
1y9lA	115	53.45		
3chvA	284	53.46		
2gduA	504	55.24	b.71.1.1,c.1.8.1	135032,135033
1xu1R	42	56.05	g.24.1.2	116036
2hftA	218	57.70	b.1.2.1,b.1.2.1	21951,21952
1cqmA	101	58.15	d.58.14.1	39321
1g8lA	411	59.40	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
1lla	628	59.93		
1vhmA	195	62.31	d.110.2.1	100691
2h8gA	267	63.23		
1zxfA	155	67.64	d.129.3.5	125771
1zdsA	336	68.16	b.6.1.3,b.6.1.3	124952,124953
1v0aA	178	70.39	b.18.1.30	119815
3besR	250	72.88		
2aqpA	164	74.64		
1zjrA	211	74.83		
1xcbA	211	75.30	a.4.5.38,c.2.1.12	109552,109553
1pyoB	105	79.39		
1ehsA	48	80.24	g.2.1.1	43998
2evvA	207	81.81		
1snrA	341	82.83	b.6.1.3,b.6.1.3	105823,105824
1ohtA	215	83.22	d.118.1.1	87036
1s3iA	310	86.72	b.46.1.1,c.65.1.1	98435,98436
1pysA	350	87.84	d.104.1.1	40775
1ovnA	248	88.77	a.71.1.1,c.47.1.7	93602,93603
1d2eA	397	89.78	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136