# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1r7aA	504	3.110	b.71.1.1,c.1.8.1	97192,97193
1em2A	229	3.336	d.129.3.2	41321
1mhnA	59	3.884	b.34.9.1	84964
2bkdN	134	4.194		
2qqrA	118	7.479		
1qtnB	95	11.49		
1nmeB	92	13.92		
1qwdA	177	13.98	b.60.1.1	96471
1wgsA	133	14.03	b.34.13.3	114622
2dkoB	103	14.46		
1sc3B	88	15.21		
1jj2B	337	18.78	b.43.3.2	63086
1oycA	400	20.41	c.1.4.1	28603
2psoA	237	21.82		
2gfaA	119	23.63	b.34.9.1,b.34.9.1	135089,135090
2hqxA	246	27.29	b.34.9.1	136675
1louA	101	28.17	d.58.14.1	39323
2gduA	504	28.29	b.71.1.1,c.1.8.1	135032,135033
2yrvA	117	29.10		
2r6hA	290	29.64		
2r55A	231	29.67		
1lla	628	33.10		
1xu1R	42	33.53	g.24.1.2	116036
2hftA	218	35.52	b.1.2.1,b.1.2.1	21951,21952
1vp2A	208	37.48	c.51.4.1	113933
1pyoB	105	37.65		
2h8gA	267	38.96		
1wznA	252	38.98	c.66.1.43	121525
1edgA	380	39.60	c.1.8.3	28807
1zxfA	155	45.42	d.129.3.5	125771
1ecrA	309	46.82	e.2.1.1	42678
1y9lA	115	50.83		
1gvhA	396	51.52	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1kt6A	183	52.74	b.60.1.1	84466
2o0rA	411	53.70		
2f2lX	167	56.55	d.118.1.1	132844
2j01E	206	56.67		
1xr4A	509	59.31	c.124.1.2,c.124.1.2	115860,115861
2ivwA	113	62.45		
1j5uA	136	62.85	d.208.1.1	71584
1vecA	206	63.83	c.37.1.19	100575
2i5nL	273	69.02	f.26.1.1	137066
1ehsA	48	71.59	g.2.1.1	43998
2pspA	106	74.09	g.16.1.1,g.16.1.1	44730,44731
1pdqA	72	76.04	b.34.13.2	94590
1dxrL	273	77.33	f.26.1.1	43431
2jixB	225	78.45		
2jepA	395	78.51		
1kmkA	406	79.25	c.67.1.3	68696
1pysA	350	82.59	d.104.1.1	40775
1rzhL	281	82.69	f.26.1.1	98164
3bh0A	315	83.22		
1vqoB	338	83.27	b.43.3.2	120363
1vc3B	97	83.78		
1cqmA	101	83.93	d.58.14.1	39321
2b3jA	159	84.02	c.97.1.2	127787
1z9nA	177	88.69		
2oh5A	248	89.80