# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bkdN	134	5.020		
1mr3F	181	10.00	c.37.1.8	79422
2eryA	172	12.23	c.37.1.8	132306
1edgA	380	12.87	c.1.8.3	28807
1fzqA	181	13.29	c.37.1.8	32060
1r7aA	504	16.35	b.71.1.1,c.1.8.1	97192,97193
2jn9A	105	18.06		
1kshA	186	21.32	c.37.1.8	72914
1louA	101	22.44	d.58.14.1	39323
1aw9A	216	23.04	a.45.1.1,c.47.1.5	17736,33030
1r8sA	164	23.91	c.37.1.8	97247
1uptA	171	24.18	c.37.1.8	99767
1qwdA	177	25.01	b.60.1.1	96471
1o3yA	166	27.26	c.37.1.8	86618
1mhnA	59	28.31	b.34.9.1	84964
1hurA	180	31.27	c.37.1.8	32052
2f2lX	167	33.01	d.118.1.1	132844
2ce2X	166	38.64		
1l7mA	211	38.94	c.108.1.4	73664
1zjrA	211	40.46		
2jepA	395	41.17		
1jj2B	337	41.49	b.43.3.2	63086
1vg8A	207	43.18	c.37.1.8	108606
2i5nL	273	46.38	f.26.1.1	137066
1ohtA	215	46.82	d.118.1.1	87036
2oqkA	117	50.00		
1ok0A	74	52.10	b.5.1.1	93191
1u8zA	168	54.51	c.37.1.8	113212
1rzhM	307	55.07	f.26.1.1	98165
1f6bA	198	55.32	c.37.1.8	64986
3bh0A	315	57.90		
2nacA	393	60.10	c.2.1.4,c.23.12.1	30088,31348
1hoe	74	60.38		
1dxrL	273	61.10	f.26.1.1	43431
2j5aA	110	61.14		
1rzhL	281	62.89	f.26.1.1	98164
2ouxA	286	63.66		
2qqrA	118	64.44		
1eysL	280	66.51	f.26.1.1	43515
1x1rA	178	68.76	c.37.1.8	121595
2f5kA	102	69.32	b.34.13.3	132995
1cqmA	101	70.91	d.58.14.1	39321
2i5nM	323	71.08	f.26.1.1	137067
2axtD	352	71.12		
1mnaA	298	75.80	c.69.1.22	79322
1wgsA	133	77.14	b.34.13.3	114622
1wmsA	177	78.64	c.37.1.8	109414
2vcyA	344	79.20		
1yzgA	179	79.73	c.37.1.8	124276
1wmmA	145	81.06	b.122.1.8	121049