# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bkdN 134 0.4303 1kzlA 208 1.712 b.43.4.3,b.43.4.3 77635,77636 2fhdA 153 2.086 1sawA 225 2.637 d.177.1.1 112050 2g3rA 123 2.792 b.34.9.1,b.34.9.1 134570,134571 1mi8A 158 3.702 b.86.1.2 91279 1rl2A 137 4.000 b.34.5.3,b.40.4.5 24610,25342 2ckkA 127 5.436 1sv6A 269 6.475 d.177.1.1 106043 1i8dA 213 6.731 b.43.4.3,b.43.4.3 61953,61954 1khcA 147 9.180 b.34.9.2 68608 2cdpA 160 9.471 1nkqA 259 9.876 d.177.1.1 103862 1wzoA 246 9.942 2qqrA 118 11.27 1at0 145 11.48 1fl0A 171 11.91 b.40.4.4 25315 2q18X 293 12.45 1at0A 145 12.91 b.86.1.1 28374 2qggA 182 13.47 2ej8A 160 14.06 2z9iA 324 15.11 1l1jA 239 16.19 b.47.1.1 84516 2i46A 161 16.34 2eb4A 267 16.46 1vqoA 240 17.02 b.34.5.3,b.40.4.5 120361,120362 2ii1A 301 17.04 1rowA 109 17.44 b.1.11.2 97676 1bdo 80 18.16 2f5kA 102 19.08 b.34.13.3 132995 2bx2L 517 19.65 2cwpA 112 20.45 2hqxA 246 22.21 b.34.9.1 136675 1h9mA 145 23.68 b.40.6.2,b.40.6.2 60833,60834 1go3E 187 24.40 b.40.4.5,d.230.1.1 83054,83055 1pdqA 72 24.76 b.34.13.2 94590 1abrB 267 25.00 b.42.2.1,b.42.2.1 25563,25564 1mhnA 59 26.05 b.34.9.1 84964 2a28A 54 26.29 2nzhA 113 27.23 2p0kA 212 28.12 1xniA 118 29.89 b.34.9.1,b.34.9.1 115582,115583 1gttA 429 30.08 d.177.1.1,d.177.1.1 70529,70530 2r58A 265 30.45 3cfuA 159 31.42 2bivA 243 32.65 b.34.9.3,b.34.9.3 128592,128593 1y14B 171 32.76 b.40.4.5,d.230.1.1 116323,116324 1hh2P 344 34.60 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1m1sA 116 35.05 b.1.11.2 84747 2ho9A 167 36.94 1hp1A 516 36.96 d.114.1.1,d.159.1.2 70976,70977 1pfbA 55 37.89 b.34.13.2 94655 2oqkA 117 39.92 1vie 62 40.49 2biqA 219 40.76 2gqvA 62 42.79 b.34.4.1 135515 1yvcA 70 43.13 b.40.4.12 124094 1bdoA 80 44.34 b.84.1.1 28214 1ylnA 252 49.33 b.45.2.1,b.45.2.2 123657,123658 1uj0A 62 49.86 b.34.2.1 99449 2a19A 175 50.07 2qdlA 165 51.34 1oz2A 331 53.08 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2elaA 175 53.34 2pljA 419 54.67 1rlw 126 55.24 2bemA 170 55.46 b.1.18.2 116698 2gfaA 119 61.22 b.34.9.1,b.34.9.1 135089,135090 2as9A 210 61.26 1ckaA 57 62.57 b.34.2.1 24459 1xtoA 311 64.15 d.157.1.6 116030 2it1A 362 64.65 2hahA 116 65.38 1sgvA 316 65.79 b.122.1.1,d.265.1.2 98858,98859 2rh2A 62 68.77 1xkrA 206 69.10 d.252.1.1 115421 1mixA 206 70.42 a.11.2.1,b.55.1.5 79166,79167 1q46A 175 70.60 a.60.14.1,b.40.4.5 111594,111595 3c2qA 345 71.02 1tufA 434 73.78 b.49.2.3,c.1.6.1 107335,107336 1br9 194 74.06 1vbvA 105 76.32 b.34.17.1 119965 2qfjA 216 76.83 2nr4A 213 77.05 1ntvA 152 77.68 b.55.1.2 86168 1tupA 219 79.67 b.2.5.2 22434 1am2A 199 80.07 b.86.1.2 28381 2b7kA 200 82.04 c.47.1.10 128042 1jxpA 186 82.33 b.47.1.3 26402 2je6I 251 82.97 2pmaA 146 84.44 1oi1A 221 85.04 b.34.9.3,b.34.9.3 87037,87038 2pieA 138 85.58 2pu9B 74 86.15 2qx2A 344 87.11 1q6uA 245 88.75 d.26.1.1 95998 3ceyA 474 88.75