# List of top-scoring protein chains for TR429.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpsA	405	39.53		
1rp9A	405	39.53	b.71.1.1,c.1.8.1	118785,118786
1ht6A	405	39.77	b.71.1.1,c.1.8.1	83629,83630
1yp1A	202	45.63		
1mxgA	435	66.51	b.71.1.1,c.1.8.1	85193,85194
1ej9A	563	69.58	d.163.1.2,e.15.1.1	42172,43265
1nh3A	563	70.31	d.163.1.2,e.15.1.1	85710,85711
1rr8C	565	70.70	d.163.1.2,e.15.1.1	105076,105077
1lpqA	564	70.77	a.2.8.1,d.163.1.2,e.15.1.1	74174,74175,74176
1yezA	68	70.81	b.40.4.12	123026
1rrjA	565	71.09	a.2.8.1,d.163.1.2,e.15.1.1	105078,105079,105080
1prtB	196	78.02	b.40.2.1,d.169.1.2	25116,42425
1ptoH	198	78.48	b.40.2.1,d.169.1.2	25126,42435
1bcpB	199	78.71	b.40.2.1,d.169.1.2	25120,42429
1a35A	591	88.95	d.163.1.2,e.15.1.1	42171,43264
1a31A	591	89.14	d.163.1.2,e.15.1.1	42170,43263
1k4tA	592	89.56	a.2.8.1,d.163.1.2,e.15.1.1	77263,77264,77265
1seuA	592	89.56	a.2.8.1,d.163.1.2,e.15.1.1	118952,118953,118954