# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.1472 b.34.9.1 84964 1g5vA 88 0.2907 b.34.9.1 60292 1wgsA 133 0.4284 b.34.13.3 114622 1bcpC 199 1.414 b.40.2.1,d.169.1.2 25121,42430 1ecxA 384 3.063 c.67.1.3 34431 1wmvA 54 3.945 1rkiA 102 4.301 d.308.1.2 118776 2e6iA 64 4.342 2j5aA 110 4.354 1jfxA 217 4.423 c.1.8.8 62943 1zc1A 208 4.499 1b94A 244 4.880 c.52.1.2 33250 1sddA 306 5.546 b.6.1.3,b.6.1.3 105431,105432 1bcpB 199 6.118 b.40.2.1,d.169.1.2 25120,42429 1b96A 244 6.206 c.52.1.2 33268 2f5kA 102 6.366 b.34.13.3 132995 1eonA 245 6.672 c.52.1.2 33238 2gfaA 119 7.306 b.34.9.1,b.34.9.1 135089,135090 2eryA 172 7.701 c.37.1.8 132306 1kmkA 406 8.678 c.67.1.3 68696 2qqrA 118 9.186 2btlA 134 9.423 b.148.1.1 129154 1eg5A 384 9.597 c.67.1.3 34429 1b97A 244 9.689 c.52.1.2 33252 2i2lA 142 10.59 1r61A 207 11.34 c.8.8.1 97138 2pd8A 149 11.86 1v5sA 126 11.97 d.129.6.1 108384 2eqkA 85 12.70 2r7eA 742 12.91 1kcw 1046 13.47 1p3wA 404 14.45 c.67.1.3 87752 1ul7A 102 14.64 d.129.6.1 99540 1llaA 628 14.89 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1lba 146 15.76 2nujA 163 16.24 d.38.1.1 138608 1i78A 297 17.17 f.4.4.1 66046 1vqoK 132 18.18 b.39.1.1 120372 2gar 212 18.50 1bngA 110 20.29 d.1.1.2 36184 1b2zA 110 20.87 d.1.1.2 36216 2ds3A 761 21.00 2ra6A 166 21.02 1g1sA 162 21.96 d.169.1.1,g.3.11.1 65100,65101 2ofzA 138 23.19 1sx5A 244 23.94 c.52.1.2 99023 2opkA 112 24.10 1cczA 171 24.86 b.1.1.1,b.1.1.3 19758,21683 1m6nA 802 24.89 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 3d72A 149 24.92 1x24A 180 26.15 2pdrA 149 30.14 2bxxA 134 30.98 b.148.1.1 129446 1sk4A 163 32.91 d.118.1.1 105664 2nlvA 112 33.23 d.326.1.1 138362 1jnuA 104 35.67 d.110.3.6 71762 2gecA 139 38.54 b.148.1.1 135059 1kbvA 327 40.44 b.6.1.3,b.6.1.3 68395,68396 1zoyB 252 42.94 2b2yA 187 43.25 b.34.13.2,b.34.13.2 127754,127755 1xniA 118 43.50 b.34.9.1,b.34.9.1 115582,115583 1n27A 96 44.05 b.34.9.2 91549 1j3kA 280 45.30 c.71.1.1 84070 2jgbA 195 45.75 1vjoA 393 46.71 c.67.1.3 100827 2psoA 237 48.35 1ssfA 156 48.74 b.34.9.1,b.34.9.1 105982,105983 1lbaA 146 48.83 d.118.1.1 41062 1yewA 382 48.94 1ys5A 164 49.42 f.4.1.3 123956 2g3rA 123 53.27 b.34.9.1,b.34.9.1 134570,134571 1p0yA 444 55.28 a.166.1.1,b.85.7.3 87654,87655 1i7kA 179 55.29 d.20.1.1 61889 1b8oA 284 56.25 c.56.2.1 33762 2fytA 340 58.02 c.66.1.6 134391 1xn5A 146 58.09 d.129.3.5 115574 2d9gA 53 58.24 1j1nA 492 58.89 c.94.1.1 83978 1at0 145 59.14 1ekgA 127 60.14 d.82.2.1 40021 1s6yA 450 60.43 c.2.1.5,d.162.1.2 105314,105315 1s96A 219 61.04 c.37.1.1 98740 1c0nA 406 61.82 c.67.1.3 34433 1at0A 145 62.55 b.86.1.1 28374 1aroL 151 63.15 d.118.1.1 41063 1brhA 110 63.20 d.1.1.2 36151 1louA 101 63.51 d.58.14.1 39323 2cjaA 522 64.97 1lniA 96 65.61 d.1.1.2 74046 1baoA 110 69.00 d.1.1.2 36187 1ris 101 69.67 2z9wA 392 70.76 2q8xA 331 71.60 3bs4A 260 72.67 2j5wA 1065 73.09 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 138067,138068,138069,138070,138071 1t3iA 420 73.11 c.67.1.3 106354 2aynA 404 73.49 d.3.1.9 127563 1b2sA 110 73.50 d.1.1.2 36213 1khcA 147 75.20 b.34.9.2 68608 2fr5A 146 76.23 c.97.1.1 133965 3bwuC 205 77.64 1wgxA 73 78.10 a.4.1.3 114626 1banA 110 79.84 d.1.1.2 36197 1obbA 480 79.91 c.2.1.5,d.162.1.2 86760,86761 1j9qA 341 80.56 b.6.1.3,b.6.1.3 62765,62766 8abpA 306 80.88 c.93.1.1 35647 1xcbA 211 80.94 a.4.5.38,c.2.1.12 109552,109553 2p1zA 180 81.19 2dt5A 211 82.02 a.4.5.38,c.2.1.12 131708,131709 2a5dA 175 84.74 c.37.1.8 126172 1g8kA 825 86.87 b.52.2.2,c.81.1.1 26920,35328 2yyoA 171 87.19 2jn9A 105 87.19 1v10A 521 89.85 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226