# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1wgsA	133	1.188	b.34.13.3	114622
1mhnA	59	1.231	b.34.9.1	84964
1g5vA	88	4.230	b.34.9.1	60292
2f5kA	102	16.55	b.34.13.3	132995
2eryA	172	25.09	c.37.1.8	132306
2eqkA	85	29.38		
1ecxA	384	32.82	c.67.1.3	34431
1eonA	245	34.03	c.52.1.2	33238
1b94A	244	34.63	c.52.1.2	33250
1n27A	96	35.11	b.34.9.2	91549
2btlA	134	37.60	b.148.1.1	129154
2jn9A	105	39.79		
1x1iA	752	45.82	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
2e6iA	64	56.70		
2gecA	139	59.74	b.148.1.1	135059
1b96A	244	59.81	c.52.1.2	33268
2ge7A	108	65.16	d.254.1.2	135049
1b97A	244	65.88	c.52.1.2	33252
2gfaA	119	66.01	b.34.9.1,b.34.9.1	135089,135090
1sx5A	244	66.33	c.52.1.2	99023
2j5aA	110	66.78		
1r61A	207	68.93	c.8.8.1	97138
2gar	212	69.76		
2nzhA	113	73.34		
1jfxA	217	74.30	c.1.8.8	62943
2a5dA	175	76.14	c.37.1.8	126172
1gd7A	109	81.84	b.40.4.4	60441
1xniA	118	86.53	b.34.9.1,b.34.9.1	115582,115583
1wz4A	23	86.98		
1u9lA	70	87.74	a.60.4.2	107751