# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.4948 b.34.9.1 84964 1g5vA 88 0.8978 b.34.9.1 60292 1wgsA 133 0.9713 b.34.13.3 114622 2j5aA 110 3.631 1ecxA 384 4.138 c.67.1.3 34431 1wmvA 54 4.245 2btlA 134 4.536 b.148.1.1 129154 1jfxA 217 7.027 c.1.8.8 62943 2e6iA 64 7.628 1bcpC 199 8.383 b.40.2.1,d.169.1.2 25121,42430 1eg5A 384 10.41 c.67.1.3 34429 2gfaA 119 14.62 b.34.9.1,b.34.9.1 135089,135090 1b94A 244 14.78 c.52.1.2 33250 1i78A 297 14.85 f.4.4.1 66046 1m6nA 802 15.31 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 2gecA 139 15.75 b.148.1.1 135059 2f5kA 102 15.97 b.34.13.3 132995 1bngA 110 16.01 d.1.1.2 36184 1b96A 244 16.17 c.52.1.2 33268 1b2zA 110 16.40 d.1.1.2 36216 2ofzA 138 16.53 1sddA 306 16.75 b.6.1.3,b.6.1.3 105431,105432 1eonA 245 17.98 c.52.1.2 33238 2bxxA 134 18.38 b.148.1.1 129446 2gar 212 20.15 3bs4A 260 21.11 1p3wA 404 22.56 c.67.1.3 87752 1vqoK 132 24.10 b.39.1.1 120372 1b2sA 110 24.28 d.1.1.2 36213 2qqrA 118 24.89 1b3sA 110 25.81 d.1.1.2 36229 1i06A 180 27.28 b.60.1.1 27131 2jgbA 195 27.64 1b97A 244 28.66 c.52.1.2 33252 2ra6A 166 29.05 1mup 166 29.07 1brhA 110 29.76 d.1.1.2 36151 2pd8A 149 29.96 1z41A 338 30.15 c.1.4.1 124421 1x24A 180 30.75 1bcpB 199 30.94 b.40.2.1,d.169.1.2 25120,42429 2r7eA 742 31.33 2eryA 172 31.71 c.37.1.8 132306 1p0yA 444 32.76 a.166.1.1,b.85.7.3 87654,87655 1b21A 110 32.88 d.1.1.2 36219 1kmkA 406 33.87 c.67.1.3 68696 1rkiA 102 34.41 d.308.1.2 118776 1v5sA 126 35.28 d.129.6.1 108384 1zc1A 208 35.39 2eqkA 85 35.53 1kcw 1046 36.11 1kbvA 327 36.55 b.6.1.3,b.6.1.3 68395,68396 1n7oA 721 38.13 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2nujA 163 38.89 d.38.1.1 138608 2hs8A 402 39.32 1ul7A 102 39.82 d.129.6.1 99540 1wgxA 73 40.02 a.4.1.3 114626 2psoA 237 40.34 2i2lA 142 40.68 1b20A 110 42.38 d.1.1.2 36207 2opkA 112 44.96 1lba 146 45.33 2h8zA 359 45.84 1qy1A 174 47.69 b.60.1.1 96568 2bjrA 368 48.43 b.169.1.1,b.169.1.1 128628,128629 1lniA 96 48.93 d.1.1.2 74046 1b8oA 284 49.87 c.56.2.1 33762 1sx5A 244 50.12 c.52.1.2 99023 1louA 101 51.18 d.58.14.1 39323 1baoA 110 51.38 d.1.1.2 36187 1i8vA 96 51.91 d.1.1.2 61985 2hsaA 402 53.54 1lp3A 519 53.81 b.121.5.2 74169 1ris 101 54.86 1a2pA 110 56.22 d.1.1.2 36140 1gouA 116 57.17 d.1.1.2 65429 1llaA 628 57.53 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1rnbA 110 58.07 d.1.1.2 36196 2ds3A 761 58.09 2fr5A 146 58.70 c.97.1.1 133965 1banA 110 59.67 d.1.1.2 36197 2ge7A 108 60.39 d.254.1.2 135049 2jn9A 105 60.77 1uu1A 335 60.88 c.67.1.1 99993 1gmpA 96 61.08 d.1.1.2 36036 3d72A 149 61.60 1x89A 178 62.58 b.60.1.1 121799 1n27A 96 62.73 b.34.9.2 91549 1clc 639 65.49 1s96A 219 66.02 c.37.1.1 98740 1i0vA 104 66.67 d.1.1.4 36054 1xniA 118 67.50 b.34.9.1,b.34.9.1 115582,115583 1clcA 639 68.38 a.102.1.2,b.1.18.2 18835,21872 2nlvA 112 69.50 d.326.1.1 138362 1y9uA 323 70.12 c.94.1.1 116594 2b2yA 187 71.51 b.34.13.2,b.34.13.2 127754,127755 1pylA 97 74.68 d.1.1.2 104391 1cczA 171 75.27 b.1.1.1,b.1.1.3 19758,21683 1k2fA 190 77.99 b.8.1.2 68054 2je0A 149 80.08 1tf5A 844 80.88 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2rieA 160 81.81 1x1iA 752 82.53 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2gouA 365 84.76 2iwvA 281 84.82 1psuA 140 85.83 d.38.1.5 88285 1jnuA 104 86.17 d.110.3.6 71762 2pdrA 149 87.79 1jtkA 136 88.69 c.97.1.1 71862 3cpnA 330 88.78 1oycA 400 89.14 c.1.4.1 28603 2h2tB 175 89.47