# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g5vA 88 1.366 b.34.9.1 60292 1clc 639 1.816 1mhnA 59 1.947 b.34.9.1 84964 1wgsA 133 2.351 b.34.13.3 114622 1ebbA 202 3.007 c.60.1.1 64900 1clcA 639 3.500 a.102.1.2,b.1.18.2 18835,21872 3vubA 101 4.135 b.34.6.1 24613 2gq1A 332 4.748 2imjA 166 5.142 1i06A 180 5.336 b.60.1.1 27131 2p3yA 491 5.427 2q8xA 331 5.464 1pscA 365 8.378 c.1.9.3 29058 1y9uA 323 8.874 c.94.1.1 116594 3bs4A 260 9.766 2hjeA 221 10.18 1sat 471 10.39 2a2nA 176 11.24 b.62.1.1 126041 2gfaA 119 12.34 b.34.9.1,b.34.9.1 135089,135090 2btlA 134 15.11 b.148.1.1 129154 1i0dA 332 16.19 c.1.9.3 61487 2e6iA 64 18.02 2dnjA 260 19.07 d.151.1.1 41790 3d72A 149 19.60 1m8nA 121 19.67 b.81.2.1 78771 1ti6A 875 19.93 b.52.2.2,c.81.1.1 106974,106975 1zkcA 197 20.07 b.62.1.1 125182 2pd8A 149 20.45 1kfiA 572 20.70 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68555,68556,68557,68558 1fwxA 595 22.82 b.6.1.4,b.69.3.1 60069,60070 1ih7A 903 23.55 c.55.3.5,e.8.1.1 62375,62376 1wmvA 54 24.49 2j5wA 1065 25.21 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 138067,138068,138069,138070,138071 2cas 548 27.42 3fibA 249 28.73 d.171.1.1 42455 1kcw 1046 29.50 2tgiA 112 30.21 g.17.1.2 44777 1np3A 338 30.48 a.100.1.2,c.2.1.6 85946,85947 1lba 146 31.16 1z90A 469 31.29 b.81.1.4,c.68.1.5 124732,124733 1ny6A 267 31.91 c.37.1.20 92321 3thiA 371 32.25 c.94.1.1 35792 1v2dA 381 32.46 c.67.1.1 108281 1uwwA 191 32.59 b.18.1.23 108079 1bcpC 199 33.35 b.40.2.1,d.169.1.2 25121,42430 2f1cX 286 33.93 1bvzA 585 35.45 b.1.18.2,b.71.1.1,c.1.8.1 21856,27783,28770 1b94A 244 35.75 c.52.1.2 33250 1bheA 376 35.76 b.80.1.3 28030 1oycA 400 36.01 c.1.4.1 28603 1s96A 219 36.75 c.37.1.1 98740 1p49A 562 37.50 c.76.1.2 94089 1eonA 245 37.77 c.52.1.2 33238 2vq3A 215 38.09 1j31A 262 38.72 d.160.1.2 90808 1c8gA 548 40.61 b.121.5.2 23380 1ho1A 242 40.83 c.1.24.1 61097 1qasA 622 41.49 a.39.1.7,b.7.1.1,c.1.18.1 17340,23157,29585 2rieA 160 41.62 2afwA 329 41.71 c.56.5.8 126707 1ciyA 590 45.58 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 2thiA 379 47.43 c.94.1.1 35794 1ctn 540 48.61 1b08A 158 49.89 d.169.1.1,h.1.1.1 42416,45423 1obpA 159 49.98 b.60.1.1 27092 2halA 212 50.25 b.47.1.4 136289 2fuqA 747 50.74 1zc1A 208 51.97 2bitX 165 54.12 b.62.1.1 128590 1uc8A 280 56.04 c.30.1.6,d.142.1.7 99165,99166 1lbaA 146 56.32 d.118.1.1 41062 1g0uD 241 56.36 d.153.1.4 41949 1rkiA 102 56.57 d.308.1.2 118776 1qo2A 241 57.42 c.1.2.1 28533 1v5sA 126 57.50 d.129.6.1 108384 2ih2A 421 58.78 1oe1A 336 59.66 b.6.1.3,b.6.1.3 86891,86892 2ofzA 138 61.17 3cmgA 667 62.06 2r85A 334 62.16 1xafA 246 62.18 d.194.1.2 109535 2f5kA 102 62.19 b.34.13.3 132995 1q9iA 571 63.06 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1iyxA 432 63.95 c.1.11.1,d.54.1.1 83815,83816 1x24A 180 64.09 1b2zA 110 64.19 d.1.1.2 36216 1q35A 320 64.44 c.94.1.1 95661 1fnf 368 64.51 1at0A 145 64.98 b.86.1.1 28374 2f01A 127 65.08 b.61.1.1 132647 1ul7A 102 65.30 d.129.6.1 99540 2opkA 112 65.90 2c61A 469 66.29 1j32A 388 68.01 c.67.1.1 77067 1hv8A 367 68.31 c.37.1.19,c.37.1.19 32405,32406 2qqrA 118 68.32 1vqoK 132 71.29 b.39.1.1 120372 1z41A 338 71.30 c.1.4.1 124421 1w0pA 781 71.35 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1b2wH 220 72.96 b.1.1.1,b.1.1.2 20307,21299 2uvkA 357 73.52 1qusA 322 73.56 d.2.1.6 36991 1p9aG 290 74.34 c.10.2.7 87990 2citA 282 74.74 c.1.8.3 130499 1bcpB 199 76.87 b.40.2.1,d.169.1.2 25120,42429 1ur1A 378 77.26 c.1.8.3 99804 2oa8A 233 78.96 2ovsA 118 79.79 1i0vA 104 80.64 d.1.1.4 36054 1brhA 110 81.33 d.1.1.2 36151 1pz7A 204 81.49 b.29.1.4 95405 1b3sA 110 81.68 d.1.1.2 36229 1aroL 151 81.71 d.118.1.1 41063 1eexA 554 83.08 c.1.19.3 29650 1arhA 396 84.62 c.67.1.1 34321 2j0eA 266 84.69 2oolA 337 85.23 2hqxA 246 86.81 b.34.9.1 136675 2a6vA 226 87.04 b.29.1.13 126312 2h8zA 359 87.16 1g1sA 162 87.42 d.169.1.1,g.3.11.1 65100,65101 1b20A 110 88.88 d.1.1.2 36207 1xcbA 211 89.11 a.4.5.38,c.2.1.12 109552,109553 1cb8A 678 89.89 a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422