# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.9285 b.34.9.1 84964 1g5vA 88 1.044 b.34.9.1 60292 1wgsA 133 1.509 b.34.13.3 114622 1ecxA 384 6.067 c.67.1.3 34431 2e6iA 64 6.978 1wmvA 54 9.309 1jfxA 217 9.908 c.1.8.8 62943 2btlA 134 9.99 b.148.1.1 129154 2j5aA 110 10.58 1eg5A 384 14.65 c.67.1.3 34429 1b94A 244 16.41 c.52.1.2 33250 1zc1A 208 16.90 1bcpC 199 17.13 b.40.2.1,d.169.1.2 25121,42430 1eonA 245 17.55 c.52.1.2 33238 1v5sA 126 19.73 d.129.6.1 108384 1rkiA 102 20.16 d.308.1.2 118776 1m6nA 802 20.89 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1b96A 244 21.02 c.52.1.2 33268 1p3wA 404 24.00 c.67.1.3 87752 1kbvA 327 24.55 b.6.1.3,b.6.1.3 68395,68396 1kmkA 406 29.56 c.67.1.3 68696 3bs4A 260 30.91 1vqoK 132 31.68 b.39.1.1 120372 2eryA 172 31.72 c.37.1.8 132306 1b97A 244 32.34 c.52.1.2 33252 2f5kA 102 32.48 b.34.13.3 132995 2gar 212 32.71 2gfaA 119 33.13 b.34.9.1,b.34.9.1 135089,135090 2r7eA 742 34.70 2qqrA 118 34.78 2gecA 139 35.73 b.148.1.1 135059 2bxxA 134 35.96 b.148.1.1 129446 1b2zA 110 36.13 d.1.1.2 36216 1uu1A 335 37.94 c.67.1.1 99993 1ul7A 102 38.76 d.129.6.1 99540 1p0yA 444 38.92 a.166.1.1,b.85.7.3 87654,87655 2ofzA 138 39.23 2hs8A 402 41.16 1brhA 110 41.59 d.1.1.2 36151 2pd8A 149 43.57 1b2sA 110 46.27 d.1.1.2 36213 1i78A 297 46.87 f.4.4.1 66046 1b3sA 110 47.95 d.1.1.2 36229 1bngA 110 49.07 d.1.1.2 36184 2i2lA 142 49.20 1wgxA 73 49.43 a.4.1.3 114626 1n7oA 721 50.98 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1lba 146 53.23 2eqkA 85 53.78 1x24A 180 53.99 1zxfA 155 56.43 d.129.3.5 125771 2hsaA 402 56.85 1sx5A 244 59.37 c.52.1.2 99023 1banA 110 60.84 d.1.1.2 36197 2gouA 365 64.40 1n27A 96 64.92 b.34.9.2 91549 1xcbA 211 65.32 a.4.5.38,c.2.1.12 109552,109553 1clc 639 65.94 1bcpB 199 67.06 b.40.2.1,d.169.1.2 25120,42429 1baoA 110 69.52 d.1.1.2 36187 1z41A 338 69.53 c.1.4.1 124421 2jgbA 195 70.15 1lniA 96 71.84 d.1.1.2 74046 1sddA 306 73.55 b.6.1.3,b.6.1.3 105431,105432 1kcw 1046 76.14 1c0nA 406 76.64 c.67.1.3 34433 1llaA 628 77.14 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1clcA 639 82.26 a.102.1.2,b.1.18.2 18835,21872 1cczA 171 83.30 b.1.1.1,b.1.1.3 19758,21683 1j9qA 341 84.33 b.6.1.3,b.6.1.3 62765,62766 2ra6A 166 86.82 1x1iA 752 87.21 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2h8zA 359 89.28