# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.4169 b.34.9.1 84964 1g5vA 88 0.6931 b.34.9.1 60292 1wgsA 133 0.7369 b.34.13.3 114622 2j5aA 110 3.037 1wmvA 54 4.695 2e6iA 64 5.559 1ecxA 384 9.021 c.67.1.3 34431 2r7eA 742 12.17 1b94A 244 13.71 c.52.1.2 33250 1bcpC 199 15.19 b.40.2.1,d.169.1.2 25121,42430 2gfaA 119 15.46 b.34.9.1,b.34.9.1 135089,135090 1n7oA 721 15.61 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1sddA 306 16.53 b.6.1.3,b.6.1.3 105431,105432 1rkiA 102 17.47 d.308.1.2 118776 2btlA 134 18.09 b.148.1.1 129154 1zc1A 208 18.16 2qqrA 118 18.57 1eg5A 384 19.00 c.67.1.3 34429 1bcpB 199 19.30 b.40.2.1,d.169.1.2 25120,42429 1b96A 244 19.30 c.52.1.2 33268 1x1iA 752 20.84 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1vqoK 132 21.16 b.39.1.1 120372 2eryA 172 22.69 c.37.1.8 132306 1b97A 244 24.79 c.52.1.2 33252 1jfxA 217 25.64 c.1.8.8 62943 1v5sA 126 28.31 d.129.6.1 108384 1kbvA 327 28.55 b.6.1.3,b.6.1.3 68395,68396 1p0yA 444 29.91 a.166.1.1,b.85.7.3 87654,87655 2opkA 112 30.29 1wgxA 73 30.38 a.4.1.3 114626 3bs4A 260 30.86 1eonA 245 31.95 c.52.1.2 33238 1ul7A 102 35.48 d.129.6.1 99540 1x24A 180 38.14 1lba 146 38.71 2gouA 365 39.56 1b3sA 110 41.62 d.1.1.2 36229 2hs8A 402 43.05 1kcw 1046 47.38 2f5kA 102 48.04 b.34.13.3 132995 1g8kA 825 49.52 b.52.2.2,c.81.1.1 26920,35328 2hsaA 402 49.54 2jgbA 195 49.94 2psoA 237 50.03 1brhA 110 50.20 d.1.1.2 36151 1uu1A 335 50.60 c.67.1.1 99993 2pd8A 149 50.83 1b2zA 110 51.62 d.1.1.2 36216 1oycA 400 52.76 c.1.4.1 28603 2h8zA 359 53.74 1b8oA 284 56.10 c.56.2.1 33762 1ris 101 56.15 1bngA 110 56.46 d.1.1.2 36184 1z41A 338 56.72 c.1.4.1 124421 2eqkA 85 57.13 1b2sA 110 59.22 d.1.1.2 36213 1louA 101 59.23 d.58.14.1 39323 2ra6A 166 59.38 2ofzA 138 59.80 1xu1R 42 60.53 g.24.1.2 116036 2d9gA 53 62.21 1sx5A 244 62.59 c.52.1.2 99023 1b08A 158 64.89 d.169.1.1,h.1.1.1 42416,45423 1i78A 297 65.03 f.4.4.1 66046 2rieA 160 66.23 1j6uA 469 66.56 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1p3wA 404 66.88 c.67.1.3 87752 2gar 212 66.94 2i2lA 142 69.94 1ny6A 267 71.40 c.37.1.20 92321 1n27A 96 72.37 b.34.9.2 91549 1baoA 110 72.57 d.1.1.2 36187 1banA 110 73.27 d.1.1.2 36197 2abbA 364 73.40 c.1.4.1 126517 1wi5A 119 74.60 b.40.4.5 114661 1s96A 219 76.90 c.37.1.1 98740 1sk4A 163 77.86 d.118.1.1 105664 2p1zA 180 78.53 2bjrA 368 78.68 b.169.1.1,b.169.1.1 128628,128629 1j1nA 492 80.50 c.94.1.1 83978 2e1xA 27 82.45 2ge7A 108 83.03 d.254.1.2 135049 1j9qA 341 83.68 b.6.1.3,b.6.1.3 62765,62766 2bxxA 134 83.96 b.148.1.1 129446 1kmkA 406 85.14 c.67.1.3 68696 1lf7A 182 85.93 b.60.1.1 73878 2nujA 163 86.50 d.38.1.1 138608 2h2tB 175 86.96 1b20A 110 89.12 d.1.1.2 36207 1ssfA 156 89.48 b.34.9.1,b.34.9.1 105982,105983