# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	2.129	b.34.9.1	84964
2eryA	172	7.233	c.37.1.8	132306
1g5vA	88	7.906	b.34.9.1	60292
1eonA	245	11.52	c.52.1.2	33238
1b94A	244	16.81	c.52.1.2	33250
1b96A	244	18.73	c.52.1.2	33268
1n27A	96	21.68	b.34.9.2	91549
1b97A	244	23.29	c.52.1.2	33252
2f5kA	102	23.85	b.34.13.3	132995
2i2lA	142	24.14		
1mkfA	382	25.07	b.116.1.1	79232
1wgsA	133	26.86	b.34.13.3	114622
2nujA	163	28.44	d.38.1.1	138608
1zd9A	188	30.75	c.37.1.8	124938
2a5dA	175	35.64	c.37.1.8	126172
1r61A	207	37.21	c.8.8.1	97138
1wmvA	54	40.41		
2jn9A	105	41.34		
1gmpA	96	48.10	d.1.1.2	36036
1pylA	97	48.20	d.1.1.2	104391
1i8vA	96	48.92	d.1.1.2	61985
1lniA	96	49.49	d.1.1.2	74046
1umpA	631	51.29	a.102.4.2,a.102.4.2	99619,99620
1zhxA	438	54.13	d.338.1.1	125112
1jfxA	217	55.88	c.1.8.8	62943
1ssfA	156	57.05	b.34.9.1,b.34.9.1	105982,105983
1sx5A	244	57.74	c.52.1.2	99023
1b8oA	284	60.16	c.56.2.1	33762
1mgrA	99	63.18	d.1.1.2	79106
1rcuA	195	65.36	c.129.1.1	97295
3c68A	761	70.12		
2jgbA	195	70.18		
1n7oA	721	71.44	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
2fytA	340	72.27	c.66.1.6	134391
1gd7A	109	75.71	b.40.4.4	60441
1xniA	118	88.59	b.34.9.1,b.34.9.1	115582,115583
1khcA	147	88.82	b.34.9.2	68608
2g39A	497	89.47	c.124.1.2,c.124.1.2	134553,134554