# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 1.613 b.34.9.1 84964 2j5aA 110 2.152 1r61A 207 5.952 c.8.8.1 97138 1g5vA 88 6.302 b.34.9.1 60292 1wgsA 133 10.08 b.34.13.3 114622 2eryA 172 11.52 c.37.1.8 132306 1k2fA 190 12.55 b.8.1.2 68054 2jn9A 105 22.66 2nujA 163 26.09 d.38.1.1 138608 1lniA 96 28.40 d.1.1.2 74046 1lba 146 33.85 1b94A 244 34.09 c.52.1.2 33250 1pylA 97 34.98 d.1.1.2 104391 2b2yA 187 35.44 b.34.13.2,b.34.13.2 127754,127755 1eonA 245 37.14 c.52.1.2 33238 1b96A 244 37.63 c.52.1.2 33268 1nnlA 225 38.77 c.108.1.4 85906 1ris 101 39.06 1i8dA 213 43.48 b.43.4.3,b.43.4.3 61953,61954 1b97A 244 44.83 c.52.1.2 33252 1mkfA 382 46.03 b.116.1.1 79232 1i8vA 96 46.05 d.1.1.2 61985 1louA 101 48.07 d.58.14.1 39323 2cvzA 289 49.47 a.100.1.1,c.2.1.6 130890,130891 1zd9A 188 49.63 c.37.1.8 124938 1bcpC 199 50.17 b.40.2.1,d.169.1.2 25121,42430 1gmpA 96 50.57 d.1.1.2 36036 2f5kA 102 54.30 b.34.13.3 132995 1b5tA 275 56.34 c.1.23.1 29676 1npeA 267 56.60 b.68.5.1 92032 8abpA 306 57.85 c.93.1.1 35647 1mgrA 99 59.50 d.1.1.2 79106 1gz0A 253 60.83 c.116.1.1,d.79.3.3 76391,76392 1cqmA 101 61.22 d.58.14.1 39321 1y9uA 323 62.17 c.94.1.1 116594 2eqkA 85 62.36 1xniA 118 64.36 b.34.9.1,b.34.9.1 115582,115583 1zhxA 438 66.06 d.338.1.1 125112 1k5wA 152 66.73 b.7.1.2 68212 2pd8A 149 68.06 2bjrA 368 68.54 b.169.1.1,b.169.1.1 128628,128629 1n27A 96 69.21 b.34.9.2 91549 2evrA 246 69.74 b.34.11.3,d.3.1.16 132440,132441 1vmbA 140 70.91 d.58.14.1 113672 1dq3A 454 72.93 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1jtkA 136 73.23 c.97.1.1 71862 1i0vA 104 74.41 d.1.1.4 36054 2a5dA 175 74.58 c.37.1.8 126172 1x24A 180 77.64 1sx5A 244 79.29 c.52.1.2 99023 2jg0A 535 80.28 3bs4A 260 80.84 2g3rA 123 84.36 b.34.9.1,b.34.9.1 134570,134571 1uwzA 136 84.94 c.97.1.1 108081 1bcpB 199 86.40 b.40.2.1,d.169.1.2 25120,42429 2r7eA 742 86.63