# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g2qA	187	8.621	c.61.1.1	65117
1sc3A	178	13.74	c.17.1.1	105416
1xu1R	42	14.41	g.24.1.2	116036
2gfaA	119	16.27	b.34.9.1,b.34.9.1	135089,135090
2fkbA	180	16.69	d.113.1.2	133650
1zxfA	155	16.78	d.129.3.5	125771
2gt1A	326	18.55		
2r7gA	347	22.30		
1qwdA	177	23.78	b.60.1.1	96471
2bw4A	340	25.42	b.6.1.3,b.6.1.3	129320,129321
2q1mA	130	28.92		
2jn9A	105	30.05		
1p5dX	463	31.31	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	94138,94139,94140,94141
1oe1A	336	32.36	b.6.1.3,b.6.1.3	86891,86892
3bn1A	373	34.43		
1w30A	201	34.71	c.61.1.1	114118
1fjjA	159	42.01	b.17.1.2	59852
2asuB	234	46.13		
2hbwA	235	50.68		
2j2jA	197	50.79		
2psoA	237	51.06		
2d9gA	53	51.61		
1iqqA	200	53.44	d.124.1.1	66274
2qqrA	118	54.42		
2rdeA	251	54.91		
1ohtA	215	57.03	d.118.1.1	87036
2hxwA	237	59.46		
2j5aA	110	66.91		
2bjrA	368	67.53	b.169.1.1,b.169.1.1	128628,128629
2c71A	216	69.12	c.6.2.3	130017
1b12A	248	69.40	b.87.1.2	28388
1j1nA	492	70.93	c.94.1.1	83978
2b0vA	153	70.96	d.113.1.1	127650
2vhsA	217	71.46		
2g23A	612	73.31		
2opkA	112	75.33		
1sk4A	163	75.36	d.118.1.1	105664
1v2xA	194	76.07	c.116.1.1	100274
1ul7A	102	77.94	d.129.6.1	99540
1snrA	341	78.50	b.6.1.3,b.6.1.3	105823,105824
2uxtA	451	79.70		
1dk8A	147	79.89	a.91.1.1	18548
1llaA	628	80.01	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1fuiA	591	80.38	b.43.2.1,c.85.1.1	25674,35444
1s96A	219	80.76	c.37.1.1	98740
1n4kA	381	84.54	a.118.22.1,b.42.6.1	79992,79993
1i78A	297	88.71	f.4.4.1	66046
2ofzA	138	89.14