# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g2qA	187	3.501	c.61.1.1	65117
2gfaA	119	11.02	b.34.9.1,b.34.9.1	135089,135090
1xu1R	42	11.29	g.24.1.2	116036
1zxfA	155	13.14	d.129.3.5	125771
2bw4A	340	13.89	b.6.1.3,b.6.1.3	129320,129321
2arhA	203	15.99	d.108.1.9	127197
3bn1A	373	19.88		
1oe1A	336	22.25	b.6.1.3,b.6.1.3	86891,86892
2hxwA	237	27.75		
1ul7A	102	29.06	d.129.6.1	99540
1fjjA	159	30.08	b.17.1.2	59852
2q1mA	130	30.34		
1hplA	449	33.38	b.12.1.2,c.69.1.19	23639,34787
2hbwA	235	34.68		
2qqrA	118	34.97		
2jn9A	105	35.28		
1n4kA	381	35.77	a.118.22.1,b.42.6.1	79992,79993
1w30A	201	36.23	c.61.1.1	114118
2gt1A	326	37.23		
1wmzA	140	37.36	d.169.1.1	109422
1nnvA	110	38.50	d.17.7.1	92012
1s96A	219	41.58	c.37.1.1	98740
2nlwA	105	41.83		
1ohtA	215	47.38	d.118.1.1	87036
1llaA	628	48.26	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
2h2tB	175	49.09		
1su0B	159	50.02	d.224.1.2	106015
2bxxA	134	53.00	b.148.1.1	129446
2psoA	237	53.24		
1fuiA	591	53.31	b.43.2.1,c.85.1.1	25674,35444
2jg0A	535	53.39		
2zexA	147	53.66		
2gecA	139	56.25	b.148.1.1	135059
1fd9A	213	57.21	d.26.1.1	59771
1k5dB	201	57.85	b.55.1.3	68169
1byfA	125	58.37	d.169.1.1	42419
2vhsA	217	59.24		
2r7gA	347	59.52		
2rdeA	251	61.87		
1xniA	118	62.13	b.34.9.1,b.34.9.1	115582,115583
1ia9A	280	63.32	d.144.1.5	62113
1wgsA	133	64.30	b.34.13.3	114622
2c4bA	143	66.01	d.1.1.2,g.3.2.1	129801,129802
1a2pA	110	66.20	d.1.1.2	36140
2fkbA	180	66.49	d.113.1.2	133650
2g3rA	123	68.01	b.34.9.1,b.34.9.1	134570,134571
1sc3A	178	70.38	c.17.1.1	105416
2bemA	170	71.57	b.1.18.2	116698
1cs8A	316	72.45	d.3.1.1	37065
2j5aA	110	72.56		
1sk4A	163	72.77	d.118.1.1	105664
1l5wA	796	73.42	c.87.1.4	73605
1c4kA	730	73.53	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
2j2jA	197	75.14		
1c4rA	182	75.48	b.29.1.4	24229
1uadC	99	75.68	b.1.18.18	88379
2ofzA	138	76.65		
1m1fA	110	76.78	b.34.6.2	78401
1gouA	116	80.62	d.1.1.2	65429
2gmsA	390	83.00		
1xcbA	211	83.49	a.4.5.38,c.2.1.12	109552,109553
1qwdA	177	85.93	b.60.1.1	96471
2z2iA	191	88.45		
1txkA	498	88.76	b.1.18.2,b.30.5.9	107425,107426