# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g2qA 187 1.776 c.61.1.1 65117 2fkbA 180 6.144 d.113.1.2 133650 2g3rA 123 7.065 b.34.9.1,b.34.9.1 134570,134571 1xu1R 42 7.180 g.24.1.2 116036 2arhA 203 8.741 d.108.1.9 127197 2gfaA 119 8.832 b.34.9.1,b.34.9.1 135089,135090 1w30A 201 9.613 c.61.1.1 114118 2hbwA 235 10.48 2bw4A 340 10.69 b.6.1.3,b.6.1.3 129320,129321 2c71A 216 11.48 c.6.2.3 130017 2o5fA 171 14.13 1oe1A 336 14.45 b.6.1.3,b.6.1.3 86891,86892 2jn9A 105 16.18 1fjjA 159 17.78 b.17.1.2 59852 3bodA 178 18.23 1c4rA 182 18.36 b.29.1.4 24229 1llaA 628 18.40 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1wgsA 133 18.84 b.34.13.3 114622 2gt1A 326 19.29 2opkA 112 20.32 3bn1A 373 20.34 2bjrA 368 20.56 b.169.1.1,b.169.1.1 128628,128629 2qqrA 118 22.87 1n4kA 381 24.33 a.118.22.1,b.42.6.1 79992,79993 2jm1A 141 24.92 2ojwA 384 27.35 1at0 145 27.70 1msoB 30 27.99 g.1.1.1 85092 1fuiA 591 28.37 b.43.2.1,c.85.1.1 25674,35444 2jg0A 535 28.38 2oatA 439 28.48 c.67.1.4 34452 1fd9A 213 30.48 d.26.1.1 59771 2psoA 237 30.98 2j5aA 110 31.61 1i78A 297 31.70 f.4.4.1 66046 1xpjA 126 32.27 c.108.1.18 115739 1e5eA 404 33.31 c.67.1.3 59265 2evrA 246 33.78 b.34.11.3,d.3.1.16 132440,132441 1s96A 219 35.98 c.37.1.1 98740 2o1cA 150 37.00 2q1mA 130 37.16 2rdeA 251 38.54 1nnvA 110 38.74 d.17.7.1 92012 1ul7A 102 39.21 d.129.6.1 99540 2i74A 189 42.39 b.18.1.29 137100 1at0A 145 42.46 b.86.1.1 28374 2a28A 54 44.77 1am2A 199 45.16 b.86.1.2 28381 1uz5A 402 45.48 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1fuxA 166 46.08 b.17.1.2 60034 1iarB 207 49.00 b.1.2.1,b.1.2.1 22037,22038 1c4kA 730 49.84 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1xniA 118 50.68 b.34.9.1,b.34.9.1 115582,115583 1zxfA 155 51.77 d.129.3.5 125771 1txkA 498 54.52 b.1.18.2,b.30.5.9 107425,107426 1ugnA 198 54.53 b.1.1.4,b.1.1.4 107828,107829 2f5kA 102 54.76 b.34.13.3 132995 1l5wA 796 55.17 c.87.1.4 73605 1qwdA 177 56.12 b.60.1.1 96471 2z9iA 324 57.31 2bsxA 253 57.93 c.56.2.1 129128 2nwfA 141 59.11 3b6nA 187 59.45 2h8gA 267 60.50 3ci6A 171 60.86 1sesA 421 61.19 a.2.7.1,d.104.1.1 15710,40710 3borA 237 64.68 2pthA 193 65.44 c.56.3.1 33793 1u8xX 472 66.59 c.2.1.5,d.162.1.2 107741,107742 2zexA 147 67.77 1m1fA 110 68.11 b.34.6.2 78401 1vqoK 132 73.37 b.39.1.1 120372 2pspA 106 73.85 g.16.1.1,g.16.1.1 44730,44731 1xfsA 178 74.05 d.129.3.5 109589 2aeeA 211 74.22 c.61.1.1 126620 2gjdA 157 77.35 1nxmA 197 77.85 b.82.1.1 86385 1zn8A 180 80.03 c.61.1.1 125376 1su0B 159 80.59 d.224.1.2 106015 1uadC 99 85.47 b.1.18.18 88379