# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xu1R	42	15.04	g.24.1.2	116036
1g2qA	187	15.37	c.61.1.1	65117
1zxfA	155	19.71	d.129.3.5	125771
2fkbA	180	21.35	d.113.1.2	133650
2r7gA	347	21.59		
2hxwA	237	26.88		
2gfaA	119	27.14	b.34.9.1,b.34.9.1	135089,135090
2gt1A	326	27.93		
3bn1A	373	31.12		
2jn9A	105	31.13		
2ojwA	384	32.97		
1sc3A	178	33.90	c.17.1.1	105416
2c71A	216	34.91	c.6.2.3	130017
1fuiA	591	36.71	b.43.2.1,c.85.1.1	25674,35444
1byfA	125	47.36	d.169.1.1	42419
1llaA	628	48.85	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1c4kA	730	52.49	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
1q0uA	219	52.71	c.37.1.19	95512
1w30A	201	53.83	c.61.1.1	114118
1qwdA	177	55.65	b.60.1.1	96471
1dv0A	47	57.09	a.5.2.1	16289
2j2jA	197	58.67		
2arhA	203	59.51	d.108.1.9	127197
2bw4A	340	60.43	b.6.1.3,b.6.1.3	129320,129321
2cy7A	396	60.98		
1ul7A	102	61.02	d.129.6.1	99540
1wgxA	73	63.37	a.4.1.3	114626
1wmzA	140	63.85	d.169.1.1	109422
1s96A	219	66.15	c.37.1.1	98740
1em2A	229	66.52	d.129.3.2	41321
2j5aA	110	67.18		
2a4vA	159	68.09	c.47.1.10	126163
3borA	237	68.11		
2q1mA	130	70.00		
2bjrA	368	73.02	b.169.1.1,b.169.1.1	128628,128629
2h2tB	175	77.56		
1iqqA	200	79.61	d.124.1.1	66274
1oe1A	336	81.31	b.6.1.3,b.6.1.3	86891,86892
2opkA	112	82.63		
1n4kA	381	84.36	a.118.22.1,b.42.6.1	79992,79993
2gmsA	390	85.91		
1i78A	297	87.13	f.4.4.1	66046
1dk8A	147	87.68	a.91.1.1	18548
1ohtA	215	88.28	d.118.1.1	87036
2d9gA	53	88.42		
2vhsA	217	88.43