# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zxfA	155	12.28	d.129.3.5	125771
1g2qA	187	13.25	c.61.1.1	65117
1xu1R	42	20.29	g.24.1.2	116036
2fkbA	180	21.64	d.113.1.2	133650
2gfaA	119	22.45	b.34.9.1,b.34.9.1	135089,135090
2gt1A	326	24.18		
1fuiA	591	28.90	b.43.2.1,c.85.1.1	25674,35444
2r7gA	347	29.98		
2jn9A	105	30.13		
3bn1A	373	31.18		
2ojwA	384	35.13		
2hxwA	237	36.91		
1w30A	201	38.13	c.61.1.1	114118
1ul7A	102	43.78	d.129.6.1	99540
1byfA	125	45.67	d.169.1.1	42419
2bw4A	340	48.51	b.6.1.3,b.6.1.3	129320,129321
2h2tB	175	51.38		
1llaA	628	51.41	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
2a4vA	159	51.76	c.47.1.10	126163
1sc3A	178	52.89	c.17.1.1	105416
1dv0A	47	56.90	a.5.2.1	16289
1c4kA	730	57.05	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
1ohtA	215	58.39	d.118.1.1	87036
1ml4A	308	60.31	c.78.1.1,c.78.1.1	79255,79256
1wmzA	140	61.73	d.169.1.1	109422
1oe1A	336	62.47	b.6.1.3,b.6.1.3	86891,86892
2c71A	216	65.26	c.6.2.3	130017
2arhA	203	69.27	d.108.1.9	127197
2cy7A	396	71.01		
2q1mA	130	71.55		
1wgxA	73	71.64	a.4.1.3	114626
1qwdA	177	72.29	b.60.1.1	96471
1jmmA	377	74.06	b.30.6.1	71749
1esoA	154	75.50	b.1.8.1	22293
2vhsA	217	77.75		
2bxxA	134	79.67	b.148.1.1	129446
2ofzA	138	80.39		
2gmsA	390	80.44		
2d9gA	53	82.39		
2hbwA	235	82.84		
2asuB	234	83.63		
1sk4A	163	85.25	d.118.1.1	105664
2gecA	139	86.69	b.148.1.1	135059
2j5aA	110	87.93		
2opkA	112	89.52