# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xu1R	42	16.72	g.24.1.2	116036
1zxfA	155	17.34	d.129.3.5	125771
1g2qA	187	17.49	c.61.1.1	65117
1sc3A	178	22.29	c.17.1.1	105416
2r7gA	347	23.82		
2fkbA	180	26.91	d.113.1.2	133650
2gfaA	119	28.51	b.34.9.1,b.34.9.1	135089,135090
1fuiA	591	30.42	b.43.2.1,c.85.1.1	25674,35444
3bn1A	373	32.41		
2ojwA	384	36.85		
2gt1A	326	38.02		
2c71A	216	41.26	c.6.2.3	130017
2hxwA	237	41.58		
1llaA	628	47.25	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1byfA	125	52.10	d.169.1.1	42419
2bw4A	340	53.46	b.6.1.3,b.6.1.3	129320,129321
2jn9A	105	53.47		
2j2jA	197	54.13		
1qwdA	177	56.56	b.60.1.1	96471
1ul7A	102	58.90	d.129.6.1	99540
2a4vA	159	60.42	c.47.1.10	126163
1c4kA	730	61.48	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
2h2tB	175	62.36		
1w30A	201	63.92	c.61.1.1	114118
1dk8A	147	68.94	a.91.1.1	18548
2bxxA	134	72.45	b.148.1.1	129446
2j5aA	110	73.09		
1wmzA	140	75.11	d.169.1.1	109422
2gmsA	390	76.41		
1oe1A	336	76.50	b.6.1.3,b.6.1.3	86891,86892
1wgxA	73	76.93	a.4.1.3	114626
2arhA	203	78.87	d.108.1.9	127197
1esoA	154	79.41	b.1.8.1	22293
2gecA	139	81.83	b.148.1.1	135059
2d9gA	53	82.10		
2cy7A	396	82.54		
2asuB	234	82.62		
1iqqA	200	83.21	d.124.1.1	66274
1ohtA	215	85.13	d.118.1.1	87036
2opkA	112	87.43		
1a2pA	110	89.42	d.1.1.2	36140