# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g2qA 187 5.691 c.61.1.1 65117 3bn1A 373 8.132 2hxwA 237 12.06 1xu1R 42 12.09 g.24.1.2 116036 2jn9A 105 12.20 1qwdA 177 13.47 b.60.1.1 96471 1zxfA 155 14.64 d.129.3.5 125771 1c4kA 730 16.85 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 2j5aA 110 18.42 2gfaA 119 18.76 b.34.9.1,b.34.9.1 135089,135090 2arhA 203 20.07 d.108.1.9 127197 2gt1A 326 20.27 2fkbA 180 21.73 d.113.1.2 133650 2gmsA 390 25.24 2q1mA 130 25.57 2gecA 139 25.88 b.148.1.1 135059 2oatA 439 27.00 c.67.1.4 34452 1wmzA 140 27.10 d.169.1.1 109422 2opkA 112 28.89 1sc3A 178 29.97 c.17.1.1 105416 1ohtA 215 30.28 d.118.1.1 87036 2bxxA 134 31.94 b.148.1.1 129446 2r7gA 347 35.22 1i78A 297 37.07 f.4.4.1 66046 1q0uA 219 37.73 c.37.1.19 95512 1a2pA 110 37.78 d.1.1.2 36140 1s96A 219 39.54 c.37.1.1 98740 1iqqA 200 39.82 d.124.1.1 66274 2c71A 216 40.47 c.6.2.3 130017 1fc4A 401 41.74 c.67.1.4 59760 2g3rA 123 41.79 b.34.9.1,b.34.9.1 134570,134571 1w30A 201 44.08 c.61.1.1 114118 3borA 237 45.44 1gouA 116 45.55 d.1.1.2 65429 2asuB 234 45.82 2c4bA 143 46.87 d.1.1.2,g.3.2.1 129801,129802 2psoA 237 47.44 2ojwA 384 48.31 1llaA 628 48.52 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 2bjrA 368 48.73 b.169.1.1,b.169.1.1 128628,128629 1nnvA 110 49.21 d.17.7.1 92012 2ofzA 138 49.96 1l5wA 796 50.73 c.87.1.4 73605 1b9hA 388 51.52 c.67.1.4 34488 1n4kA 381 52.08 a.118.22.1,b.42.6.1 79992,79993 2rdeA 251 53.63 2hbwA 235 54.54 1xniA 118 55.86 b.34.9.1,b.34.9.1 115582,115583 1cqmA 101 59.78 d.58.14.1 39321 2aeeA 211 59.87 c.61.1.1 126620 2qqrA 118 62.16 1byfA 125 64.28 d.169.1.1 42419 2gxqA 207 64.40 1fjjA 159 64.59 b.17.1.2 59852 2h2tB 175 64.89 2vhsA 217 66.53 1ul7A 102 71.99 d.129.6.1 99540 2bw4A 340 72.39 b.6.1.3,b.6.1.3 129320,129321 1fd9A 213 72.69 d.26.1.1 59771 1vdnA 162 73.28 b.62.1.1 120006 1s3eA 520 74.00 c.3.1.2,d.16.1.5 98426,98427 1sk4A 163 75.06 d.118.1.1 105664 2cfeA 162 76.79 b.62.1.1 130375 2an9A 207 78.37 c.37.1.1 127037 1ugnA 198 79.83 b.1.1.4,b.1.1.4 107828,107829 2ffmA 91 81.12 d.267.1.1 133389 2cmtA 172 81.41 2h8gA 267 82.22 1yndA 165 82.82 b.62.1.1 123721 1m1fA 110 83.25 b.34.6.2 78401 1oe1A 336 87.70 b.6.1.3,b.6.1.3 86891,86892 1u8xX 472 87.99 c.2.1.5,d.162.1.2 107741,107742 2bitX 165 88.80 b.62.1.1 128590 1su0B 159 89.05 d.224.1.2 106015