# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zxfA	155	7.403	d.129.3.5	125771
1xu1R	42	9.073	g.24.1.2	116036
1g2qA	187	13.26	c.61.1.1	65117
2hxwA	237	14.65		
1llaA	628	16.13	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
2gfaA	119	18.77	b.34.9.1,b.34.9.1	135089,135090
3bn1A	373	18.84		
1sc3A	178	19.58	c.17.1.1	105416
2gt1A	326	21.50		
2r7gA	347	27.56		
1c4kA	730	31.45	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
1ohtA	215	32.05	d.118.1.1	87036
1qwdA	177	34.53	b.60.1.1	96471
1wmzA	140	36.56	d.169.1.1	109422
2gecA	139	37.34	b.148.1.1	135059
1byfA	125	40.09	d.169.1.1	42419
2jn9A	105	42.19		
2fkbA	180	42.33	d.113.1.2	133650
2bxxA	134	43.52	b.148.1.1	129446
1iqqA	200	43.70	d.124.1.1	66274
2j5aA	110	43.85		
1ul7A	102	44.88	d.129.6.1	99540
2arhA	203	45.23	d.108.1.9	127197
2q1mA	130	47.46		
2gmsA	390	47.93		
1y89A	238	48.06		
2bjrA	368	52.40	b.169.1.1,b.169.1.1	128628,128629
2h2tB	175	54.49		
2opkA	112	56.69		
1v2xA	194	58.71	c.116.1.1	100274
2xatA	212	58.76	b.81.1.3	28058
2ghpA	292	59.71	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
1sk4A	163	63.06	d.118.1.1	105664
1s96A	219	64.07	c.37.1.1	98740
2bw4A	340	65.24	b.6.1.3,b.6.1.3	129320,129321
1a2pA	110	65.94	d.1.1.2	36140
1nnvA	110	67.35	d.17.7.1	92012
2d9gA	53	69.73		
1fjjA	159	71.10	b.17.1.2	59852
2c4bA	143	72.76	d.1.1.2,g.3.2.1	129801,129802
1gouA	116	75.03	d.1.1.2	65429
1i78A	297	75.04	f.4.4.1	66046
1fuiA	591	75.72	b.43.2.1,c.85.1.1	25674,35444
1cbfA	285	77.41	c.90.1.1	35587
1w30A	201	77.91	c.61.1.1	114118
2c71A	216	78.24	c.6.2.3	130017
2asuB	234	81.32		
2hbwA	235	82.22		
1oe1A	336	82.50	b.6.1.3,b.6.1.3	86891,86892
1fd9A	213	82.88	d.26.1.1	59771
1j1nA	492	83.16	c.94.1.1	83978
1y9lA	115	85.34		
1c4rA	182	86.48	b.29.1.4	24229
2ojwA	384	86.57