# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zxfA	155	6.134	d.129.3.5	125771
1g2qA	187	11.68	c.61.1.1	65117
1xu1R	42	12.68	g.24.1.2	116036
2fkbA	180	14.58	d.113.1.2	133650
1fuiA	591	20.26	b.43.2.1,c.85.1.1	25674,35444
2r7gA	347	22.06		
2c71A	216	25.04	c.6.2.3	130017
2bw4A	340	28.30	b.6.1.3,b.6.1.3	129320,129321
2gfaA	119	36.86	b.34.9.1,b.34.9.1	135089,135090
1fd9A	213	37.59	d.26.1.1	59771
2arhA	203	37.81	d.108.1.9	127197
2ojwA	384	38.45		
1llaA	628	39.56	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1dv0A	47	40.29	a.5.2.1	16289
2jn9A	105	41.80		
1s96A	219	41.97	c.37.1.1	98740
1w30A	201	42.35	c.61.1.1	114118
1q0uA	219	42.76	c.37.1.19	95512
2gt1A	326	43.33		
3borA	237	45.44		
2j2jA	197	46.28		
1sc3A	178	50.01	c.17.1.1	105416
2hxwA	237	52.75		
2gxqA	207	56.40		
2j5aA	110	57.11		
1oe1A	336	57.12	b.6.1.3,b.6.1.3	86891,86892
2opkA	112	57.55		
2psoA	237	57.83		
1iarB	207	61.56	b.1.2.1,b.1.2.1	22037,22038
1nnvA	110	64.18	d.17.7.1	92012
1qwdA	177	64.21	b.60.1.1	96471
2q1mA	130	65.73		
1iqqA	200	68.38	d.124.1.1	66274
1xfsA	178	75.34	d.129.3.5	109589
2nlwA	105	75.84		
3ci6A	171	78.01		
2jg0A	535	78.06		
2oatA	439	78.15	c.67.1.4	34452
1su0B	159	78.64	d.224.1.2	106015
2bjrA	368	80.98	b.169.1.1,b.169.1.1	128628,128629
3bn1A	373	81.54		
2h2tB	175	82.85		
1wgxA	73	85.73	a.4.1.3	114626
1byfA	125	88.00	d.169.1.1	42419