Best Alignments for TR429

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1wgsA	1.1141e+01	1wgsA/TR429-1wgsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.3
1kt6A	3.1860e+01	1kt6A/TR429-1kt6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.60.1.1
1qwdA	3.2612e+01	1qwdA/TR429-1qwdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.60.1.1
1mhnA	3.3531e+01	1mhnA/TR429-1mhnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1
1jfxA	4.0056e+01	1jfxA/TR429-1jfxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.8.8
2gecA	4.1914e+01	2gecA/TR429-2gecA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.148.1.1
1wznA	4.4482e+01	1wznA/TR429-1wznA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.43
1xu1R	4.6353e+01	1xu1R/TR429-1xu1R-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.24.1.2
2cmtA	4.7563e+01	2cmtA/TR429-2cmtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gfaA	5.1010e+01	2gfaA/TR429-2gfaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1 b.34.9.1
1hbq	5.1741e+01	1hbq/TR429-1hbq-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kmkA	5.3224e+01	1kmkA/TR429-1kmkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.67.1.3
2g3rA	5.6820e+01	2g3rA/TR429-2g3rA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1 b.34.9.1
2bxxA	5.7602e+01	2bxxA/TR429-2bxxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.148.1.1
1oycA	6.2617e+01	1oycA/TR429-1oycA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.4.1
1em2A	6.5632e+01	1em2A/TR429-1em2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.129.3.2
2htgA	6.9921e+01	2htgA/TR429-2htgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j01T	7.0420e+01	2j01T/TR429-2j01T-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1j0fA	7.0629e+01	1j0fA/TR429-1j0fA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.47.1.14
2f5kA	7.2157e+01	2f5kA/TR429-2f5kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001