# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1wgsA	133	6.450	b.34.13.3	114622
1wznA	252	8.591	c.66.1.43	121525
1jfxA	217	9.690	c.1.8.8	62943
1kt6A	183	10.65	b.60.1.1	84466
1hbq	183	14.71		
1xu1R	42	15.98	g.24.1.2	116036
1kmkA	406	16.69	c.67.1.3	68696
2gfaA	119	18.19	b.34.9.1,b.34.9.1	135089,135090
1edgA	380	20.72	c.1.8.3	28807
1mhnA	59	21.96	b.34.9.1	84964
1qwdA	177	23.84	b.60.1.1	96471
2g3rA	123	25.02	b.34.9.1,b.34.9.1	134570,134571
2cmtA	172	29.69		
2qqrA	118	32.30		
2r6hA	290	33.57		
1l1qA	186	36.00	c.61.1.1	77653
1kxoA	184	37.58	b.60.1.1	84475
2gecA	139	39.45	b.148.1.1	135059
1y0bA	197	42.28	c.61.1.1	122476
1a2pA	110	45.89	d.1.1.2	36140
1zxfA	155	46.11	d.129.3.5	125771
1em2A	229	47.09	d.129.3.2	41321
2h2tB	175	50.04		
2h8gA	267	50.36		
2igbA	179	52.98		
1oycA	400	54.08	c.1.4.1	28603
2hbwA	235	54.78		
1yewA	382	55.53		
2bxxA	134	57.17	b.148.1.1	129446
1ul7A	102	57.56	d.129.6.1	99540
2ofzA	138	60.75		
1z9nA	177	62.63		
2z5aB	420	65.61		
1n27A	96	67.86	b.34.9.2	91549
1ssfA	156	69.64	b.34.9.1,b.34.9.1	105982,105983
1j0fA	100	69.81	c.47.1.14	90739
1xniA	118	69.86	b.34.9.1,b.34.9.1	115582,115583
1qb7A	236	72.24	c.61.1.1	34087
1l3aA	228	72.46	d.18.1.2	73531
1lla	628	76.16		
1zn8A	180	76.90	c.61.1.1	125376
2jn9A	105	78.15		
1eg5A	384	81.13	c.67.1.3	34429
1f5fA	205	82.04	b.29.1.4	24222
1ia9A	280	82.07	d.144.1.5	62113
1ri6A	343	82.58	b.69.11.1	97503
2gjdA	157	85.37		
1nnvA	110	88.94	d.17.7.1	92012
1aqb	183	89.53