# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1kt6A	183	10.24	b.60.1.1	84466
1qwdA	177	11.31	b.60.1.1	96471
1kmkA	406	13.80	c.67.1.3	68696
1xu1R	42	19.18	g.24.1.2	116036
1em2A	229	20.37	d.129.3.2	41321
1hbq	183	22.38		
1oycA	400	22.62	c.1.4.1	28603
1wznA	252	24.14	c.66.1.43	121525
1j0fA	100	29.33	c.47.1.14	90739
2r6hA	290	29.68		
2gfaA	119	33.30	b.34.9.1,b.34.9.1	135089,135090
1wgsA	133	35.24	b.34.13.3	114622
1kxoA	184	39.24	b.60.1.1	84475
2jn9A	105	41.06		
1ul7A	102	42.04	d.129.6.1	99540
1edgA	380	48.14	c.1.8.3	28807
1vecA	206	50.36	c.37.1.19	100575
2cmtA	172	52.34		
1xfsA	178	52.41	d.129.3.5	109589
1louA	101	54.72	d.58.14.1	39323
1aqb	183	57.75		
2gar	212	60.73		
1mhnA	59	67.10	b.34.9.1	84964
1nnvA	110	67.72	d.17.7.1	92012
1wgxA	73	68.57	a.4.1.3	114626
1l1qA	186	71.92	c.61.1.1	77653
1a2pA	110	73.00	d.1.1.2	36140
1zxfA	155	74.24	d.129.3.5	125771
1xuvA	178	75.20	d.129.3.5	116069
3cp3A	148	75.46		
1y0bA	197	77.12	c.61.1.1	122476
3gcb	470	82.52		
2bjrA	368	84.40	b.169.1.1,b.169.1.1	128628,128629
1z9nA	177	85.64		
2gecA	139	86.97	b.148.1.1	135059
1lla	628	88.18		
1bbpA	173	89.14	b.60.1.1	27147