# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1kt6A	183	7.239	b.60.1.1	84466
1kmkA	406	10.88	c.67.1.3	68696
1qwdA	177	11.33	b.60.1.1	96471
1hbq	183	14.79		
1wznA	252	15.26	c.66.1.43	121525
1wgsA	133	17.43	b.34.13.3	114622
1xu1R	42	19.74	g.24.1.2	116036
1em2A	229	22.02	d.129.3.2	41321
2gfaA	119	24.07	b.34.9.1,b.34.9.1	135089,135090
1oycA	400	24.75	c.1.4.1	28603
1ul7A	102	29.75	d.129.6.1	99540
2r6hA	290	34.62		
1j0fA	100	34.96	c.47.1.14	90739
1a2pA	110	44.43	d.1.1.2	36140
1l1qA	186	45.10	c.61.1.1	77653
1jfxA	217	46.12	c.1.8.8	62943
1xfsA	178	46.33	d.129.3.5	109589
1aqb	183	47.78		
1edgA	380	48.43	c.1.8.3	28807
1kxoA	184	48.92	b.60.1.1	84475
1zxfA	155	49.45	d.129.3.5	125771
2g3rA	123	51.72	b.34.9.1,b.34.9.1	134570,134571
2cmtA	172	53.78		
1louA	101	54.83	d.58.14.1	39323
2gecA	139	55.48	b.148.1.1	135059
2h2tB	175	56.39		
1z9nA	177	58.18		
2gar	212	62.27		
2jn9A	105	63.97		
1wgxA	73	69.27	a.4.1.3	114626
1vecA	206	69.81	c.37.1.19	100575
1zjrA	211	71.28		
2gt1A	326	73.01		
1wryA	121	73.20		
1mhnA	59	76.03	b.34.9.1	84964
1y0bA	197	76.99	c.61.1.1	122476
1sskA	158	82.42	b.148.1.1	105986
2bxxA	134	82.68	b.148.1.1	129446
1wueA	386	84.39	c.1.11.2,d.54.1.1	114892,114893
1dqsA	393	84.85	e.22.1.1	43347
2ofzA	138	85.43		
1et9A	204	86.05	b.40.2.2,d.15.6.1	25204,37793
1gcb	454	87.07		
2aqpA	164	87.23		
3gcb	470	88.51		
1lla	628	88.77