# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1kt6A	183	11.77	b.60.1.1	84466
1kmkA	406	16.49	c.67.1.3	68696
1xu1R	42	19.57	g.24.1.2	116036
1wgsA	133	20.06	b.34.13.3	114622
1qwdA	177	20.77	b.60.1.1	96471
1wznA	252	21.70	c.66.1.43	121525
1hbq	183	25.53		
2gfaA	119	26.26	b.34.9.1,b.34.9.1	135089,135090
1em2A	229	27.07	d.129.3.2	41321
2r6hA	290	32.41		
1oycA	400	34.04	c.1.4.1	28603
1j0fA	100	38.65	c.47.1.14	90739
1z9nA	177	44.94		
2cmtA	172	45.66		
1ul7A	102	47.47	d.129.6.1	99540
1edgA	380	50.71	c.1.8.3	28807
1a2pA	110	52.09	d.1.1.2	36140
1zxfA	155	52.97	d.129.3.5	125771
2gecA	139	56.06	b.148.1.1	135059
2aqpA	164	56.34		
1vecA	206	59.34	c.37.1.19	100575
2jn9A	105	59.40		
2h2tB	175	64.29		
1louA	101	71.49	d.58.14.1	39323
1aqb	183	74.02		
1l1qA	186	74.26	c.61.1.1	77653
1kxoA	184	74.54	b.60.1.1	84475
1lla	628	74.83		
1jfxA	217	75.14	c.1.8.8	62943
2g3rA	123	75.26	b.34.9.1,b.34.9.1	134570,134571
1xfsA	178	75.61	d.129.3.5	109589
2bxxA	134	75.91	b.148.1.1	129446
1sskA	158	76.52	b.148.1.1	105986
2i8aA	252	77.52		
1mhnA	59	79.48	b.34.9.1	84964
1pmhX	185	83.12	b.18.1.18	104193
2gt1A	326	83.64		
2e6iA	64	83.89		
2ofzA	138	84.41		
1xuvA	178	89.71	d.129.3.5	116069
1nnvA	110	89.86	d.17.7.1	92012
1f5fA	205	89.95	b.29.1.4	24222