# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1qwdA	177	3.163	b.60.1.1	96471
1jfxA	217	4.636	c.1.8.8	62943
1kt6A	183	5.591	b.60.1.1	84466
2cmtA	172	8.680		
1wgsA	133	15.58	b.34.13.3	114622
1hbq	183	16.50		
1xu1R	42	16.88	g.24.1.2	116036
1kmkA	406	19.64	c.67.1.3	68696
1j0fA	100	20.74	c.47.1.14	90739
1em2A	229	21.26	d.129.3.2	41321
1wznA	252	24.00	c.66.1.43	121525
2gfaA	119	24.25	b.34.9.1,b.34.9.1	135089,135090
2gecA	139	26.21	b.148.1.1	135059
1oycA	400	26.92	c.1.4.1	28603
1aqb	183	29.44		
2jn9A	105	29.98		
1mhnA	59	30.94	b.34.9.1	84964
1z9nA	177	36.71		
1kxoA	184	37.35	b.60.1.1	84475
2bjrA	368	37.81	b.169.1.1,b.169.1.1	128628,128629
2g3rA	123	39.08	b.34.9.1,b.34.9.1	134570,134571
2bxxA	134	41.23	b.148.1.1	129446
2gar	212	42.05		
1a2pA	110	42.15	d.1.1.2	36140
1ul7A	102	42.96	d.129.6.1	99540
1l1qA	186	46.47	c.61.1.1	77653
2aqpA	164	49.79		
1vecA	206	50.30	c.37.1.19	100575
1y0bA	197	51.22	c.61.1.1	122476
1zxfA	155	53.26	d.129.3.5	125771
2r6hA	290	55.53		
2z6wA	165	56.30		
2acoA	173	61.82		
2b5hA	200	64.44	b.82.1.19	127894
1ecrA	309	65.66	e.2.1.1	42678
2atfA	200	66.26	b.82.1.19	127290
2arhA	203	68.16	d.108.1.9	127197
2qqrA	118	69.45		
2psoA	237	71.62		
1louA	101	72.53	d.58.14.1	39323
2b71A	196	73.27	b.62.1.1	128004
1t1vA	93	73.30	c.47.1.14	106278
2r99A	173	74.92		
2h8gA	267	75.56		
2o0rA	411	75.80		
2ofzA	138	76.83		
1lla	628	76.90		
3bo7A	201	77.39		
2h2tB	175	77.75		
1nnvA	110	77.99	d.17.7.1	92012
2gt1A	326	78.30		
2cfeA	162	84.76	b.62.1.1	130375
1b8oA	284	85.24	c.56.2.1	33762
1fmb	104	87.86