# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1z90A	469	1.091	b.81.1.4,c.68.1.5	124732,124733
3bo7A	201	1.961		
1xfsA	178	3.805	d.129.3.5	109589
1y9uA	323	5.082	c.94.1.1	116594
1m65A	245	6.395	c.6.3.1	84847
2ek6A	95	6.794		
2aqpA	164	6.976		
1p9aG	290	7.425	c.10.2.7	87990
1esoA	154	8.036	b.1.8.1	22293
1aqb	183	8.714		
1uwwA	191	9.612	b.18.1.23	108079
1wgsA	133	12.20	b.34.13.3	114622
2pcqA	283	12.25		
2hjeA	221	12.25		
2aaa	484	12.86		
2q18X	293	14.12		
1i06A	180	14.80	b.60.1.1	27131
1mzyA	333	15.10	b.6.1.3,b.6.1.3	103848,103849
1ecrA	309	15.37	e.2.1.1	42678
1oycA	400	20.58	c.1.4.1	28603
1z9nA	177	24.35		
2hbwA	235	24.74		
1eexA	554	25.06	c.1.19.3	29650
2f1cX	286	26.81		
1z9pA	155	27.48		
2b5hA	200	27.99	b.82.1.19	127894
1a2pA	110	29.18	d.1.1.2	36140
2z6wA	165	29.28		
2g3rA	123	29.41	b.34.9.1,b.34.9.1	134570,134571
3bixA	574	30.08		
1wznA	252	30.81	c.66.1.43	121525
2gfaA	119	31.29	b.34.9.1,b.34.9.1	135089,135090
1obpA	159	31.75	b.60.1.1	27092
1xu1R	42	33.75	g.24.1.2	116036
1bvyF	191	33.93	c.23.5.1	31207
1hc7A	477	34.17	c.51.1.1,d.104.1.1,d.68.5.1	60938,60939,60940
3cvoA	202	34.25		
1oe1A	336	35.02	b.6.1.3,b.6.1.3	86891,86892
1qnjA	240	35.73	b.47.1.2	26238
2gecA	139	37.32	b.148.1.1	135059
2cmtA	172	38.21		
1ecfA	504	38.24	c.61.1.1,d.153.1.1	34053,41820
1efpB	252	39.82	c.26.2.3	31636
1avaA	403	40.79	b.71.1.1,c.1.8.1	27797,28784
1k3bA	119	41.10	b.61.5.1	72016
2evrA	246	41.65	b.34.11.3,d.3.1.16	132440,132441
2aioA	269	42.61	d.157.1.1	126829
1sh7A	284	42.86		
1sc6A	404	43.40	c.2.1.4,c.23.12.1,d.58.18.1	118932,118933,118934
1deoA	233	44.16	c.23.10.4	31345
1arsA	396	45.49	c.67.1.1	34287
2cztA	167	47.45		
1atg	231	49.42		
1mhnA	59	49.60	b.34.9.1	84964
2ixtA	310	50.30		
1vr5A	547	51.25	c.94.1.1	120437
1bkzA	135	51.95	b.29.1.3	24202
2a1kA	233	52.37		
1xn5A	146	53.19	d.129.3.5	115574
2rerA	173	53.46		
1jcfA	344	54.45	c.55.1.1,c.55.1.1	62878,62879
2atfA	200	54.53	b.82.1.19	127290
2c4bA	143	54.73	d.1.1.2,g.3.2.1	129801,129802
1snrA	341	54.89	b.6.1.3,b.6.1.3	105823,105824
3vubA	101	55.33	b.34.6.1	24613
1em2A	229	55.61	d.129.3.2	41321
1vdeA	454	56.59	b.86.1.2,d.95.2.2,d.95.2.2	28378,40581,40582
2i1sA	188	56.84		
2q16A	219	57.56		
1h8dH	260	59.20		
2douA	376	59.71		
1ru3A	732	60.53	e.26.1.3	97835
1r2zA	274	61.12	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
2i5vO	251	62.41		
1zxfA	155	63.11	d.129.3.5	125771
1vecA	206	64.39	c.37.1.19	100575
1q35A	320	65.37	c.94.1.1	95661
1lba	146	65.96		
1j0fA	100	66.46	c.47.1.14	90739
2v9tB	220	67.11		
1hk8A	605	69.44	c.7.1.3	83540
1yndA	165	71.15	b.62.1.1	123721
2r3sA	335	71.30		
1b9hA	388	73.42	c.67.1.4	34488
2g8cO	251	74.56		
2gfgA	193	75.47		
1l1qA	186	75.71	c.61.1.1	77653
1vphA	149	76.47	d.273.1.1	113955
2rduA	387	77.09		
1fwxA	595	77.51	b.6.1.4,b.69.3.1	60069,60070
1d8cA	723	77.58	c.1.13.1	29325
3c7bB	366	78.06		
2ofzA	138	78.60		
1a8rA	221	79.97	d.96.1.1	40587
2hpwA	233	82.00		
2z43A	324	82.29		
2j6iA	364	82.73		
1nnvA	110	83.78	d.17.7.1	92012
1kcbA	340	84.91	b.6.1.3,b.6.1.3	90951,90952
2ghpA	292	85.04	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
1sbpA	310	85.09	c.94.1.1	35760
1louA	101	86.25	d.58.14.1	39323
2r6hA	290	86.27		
2nxoA	291	87.40		
2acoA	173	88.12		
1hbq	183	88.96		
2gefA	217	89.98