# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jfxA	217	8.916	c.1.8.8	62943
1kt6A	183	9.456	b.60.1.1	84466
1wgsA	133	12.36	b.34.13.3	114622
1wznA	252	12.68	c.66.1.43	121525
2r6hA	290	12.82		
1qwdA	177	14.10	b.60.1.1	96471
1kmkA	406	15.63	c.67.1.3	68696
1hbq	183	22.09		
1xu1R	42	22.20	g.24.1.2	116036
1zxfA	155	23.29	d.129.3.5	125771
1oycA	400	25.63	c.1.4.1	28603
1em2A	229	33.58	d.129.3.2	41321
2cmtA	172	34.25		
2gecA	139	36.97	b.148.1.1	135059
1vecA	206	37.87	c.37.1.19	100575
2gfaA	119	38.85	b.34.9.1,b.34.9.1	135089,135090
1z9nA	177	41.81		
1xfsA	178	44.93	d.129.3.5	109589
2g3rA	123	48.13	b.34.9.1,b.34.9.1	134570,134571
1a2pA	110	51.08	d.1.1.2	36140
1edgA	380	51.43	c.1.8.3	28807
2gar	212	52.19		
2bxxA	134	52.43	b.148.1.1	129446
1lla	628	52.69		
2aqpA	164	53.41		
1f5fA	205	55.22	b.29.1.4	24222
1aqb	183	55.74		
1xn5A	146	56.65	d.129.3.5	115574
1mhnA	59	60.93	b.34.9.1	84964
1j0fA	100	61.25	c.47.1.14	90739
1nnvA	110	63.60	d.17.7.1	92012
1xuvA	178	64.32	d.129.3.5	116069
1ovnA	248	66.53	a.71.1.1,c.47.1.7	93602,93603
1kxoA	184	66.77	b.60.1.1	84475
2ek6A	95	67.02		
1sskA	158	69.21	b.148.1.1	105986
3gcb	470	72.52		
1ul7A	102	73.70	d.129.6.1	99540
2z6wA	165	74.80		
1ecrA	309	76.24	e.2.1.1	42678
2jn9A	105	77.61		
1z9pA	155	78.13		
2bjrA	368	80.62	b.169.1.1,b.169.1.1	128628,128629
2d9gA	53	80.92		
1zjrA	211	81.03		
2ofzA	138	81.78		
2evvA	207	84.29		
1et9A	204	86.61	b.40.2.2,d.15.6.1	25204,37793
2atfA	200	87.69	b.82.1.19	127290