# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1kt6A	183	10.22	b.60.1.1	84466
1qwdA	177	11.86	b.60.1.1	96471
1wgsA	133	12.30	b.34.13.3	114622
1oycA	400	14.86	c.1.4.1	28603
1xu1R	42	18.48	g.24.1.2	116036
1hbq	183	22.66		
2r6hA	290	23.92		
1wznA	252	27.80	c.66.1.43	121525
1j0fA	100	27.97	c.47.1.14	90739
2cmtA	172	30.66		
1ecrA	309	30.73	e.2.1.1	42678
1mhnA	59	31.13	b.34.9.1	84964
2gfaA	119	34.95	b.34.9.1,b.34.9.1	135089,135090
1lla	628	39.02		
1em2A	229	43.90	d.129.3.2	41321
1jfxA	217	44.46	c.1.8.8	62943
1zxfA	155	45.55	d.129.3.5	125771
1aqb	183	49.13		
1kmkA	406	49.45	c.67.1.3	68696
2o0rA	411	55.90		
1j5uA	136	61.03	d.208.1.1	71584
2g3rA	123	61.05	b.34.9.1,b.34.9.1	134570,134571
1dqsA	393	62.39	e.22.1.1	43347
1nnvA	110	65.21	d.17.7.1	92012
1wryA	121	68.03		
2d9gA	53	70.07		
2cfeA	162	71.57	b.62.1.1	130375
2z6wA	165	76.18		
1t1vA	93	76.89	c.47.1.14	106278
1yndA	165	78.24	b.62.1.1	123721
2r99A	173	82.94		
1kxoA	184	83.11	b.60.1.1	84475
2h2tB	175	83.29		
2yvpA	182	86.49		
1z9nA	177	88.32		
1vdnA	162	89.12	b.62.1.1	120006
1vecA	206	89.32	c.37.1.19	100575