# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jfxA	217	7.224	c.1.8.8	62943
1kt6A	183	7.267	b.60.1.1	84466
1wznA	252	17.00	c.66.1.43	121525
1hbq	183	20.33		
1xu1R	42	21.01	g.24.1.2	116036
1z9nA	177	24.44		
1nnvA	110	28.44	d.17.7.1	92012
1qwdA	177	28.54	b.60.1.1	96471
2aqpA	164	31.96		
2r6hA	290	32.29		
1j0fA	100	33.98	c.47.1.14	90739
1wgsA	133	34.44	b.34.13.3	114622
1mhnA	59	35.76	b.34.9.1	84964
1oycA	400	37.25	c.1.4.1	28603
1em2A	229	37.79	d.129.3.2	41321
2cmtA	172	37.94		
1edgA	380	39.40	c.1.8.3	28807
2gfaA	119	39.56	b.34.9.1,b.34.9.1	135089,135090
1aqb	183	41.99		
1kmkA	406	42.13	c.67.1.3	68696
1zxfA	155	44.29	d.129.3.5	125771
1ecrA	309	44.61	e.2.1.1	42678
2gar	212	47.80		
2gecA	139	50.97	b.148.1.1	135059
1xuvA	178	52.78	d.129.3.5	116069
2aefA	234	57.20		
1lla	628	58.05		
2g3rA	123	58.91	b.34.9.1,b.34.9.1	134570,134571
1vecA	206	59.63	c.37.1.19	100575
1xfsA	178	60.48	d.129.3.5	109589
2i8aA	252	61.67		
1f5fA	205	64.93	b.29.1.4	24222
2psoA	237	68.50		
1kxoA	184	70.03	b.60.1.1	84475
2z5aB	420	71.70		
2d9gA	53	72.84		
1bkzA	135	73.55	b.29.1.3	24202
2evvA	207	73.67		
2arhA	203	76.02	d.108.1.9	127197
1a2pA	110	76.10	d.1.1.2	36140
2atfA	200	76.34	b.82.1.19	127290
2gt1A	326	77.21		
2bxxA	134	77.86	b.148.1.1	129446
2jn9A	105	78.35		
2o0rA	411	81.46