# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jn9A	105	22.00		
2cmtA	172	26.51		
1fvpA	231	38.89	c.1.16.2	29556
2gecA	139	42.43	b.148.1.1	135059
1qwdA	177	44.22	b.60.1.1	96471
1jfxA	217	46.38	c.1.8.8	62943
1n27A	96	47.00	b.34.9.2	91549
1rlwA	126	47.96	b.7.1.1	23177
1wryA	121	48.89		
1j0fA	100	56.37	c.47.1.14	90739
1xu1R	42	58.37	g.24.1.2	116036
1ecrA	309	62.34	e.2.1.1	42678
1gvp	87	63.92		
1i78A	297	64.40	f.4.4.1	66046
2hdeA	148	65.49		
1kdxA	81	70.13	a.12.1.1	16375
1fzqA	181	87.54	c.37.1.8	32060
2o9cA	342	87.94		
1wgsA	133	89.99	b.34.13.3	114622