# List of top-scoring protein chains for TR429.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1z1zA	131	11.22	d.323.1.1	124366
1w2b5	144	11.65		
1p9yA	121	27.47	d.241.2.1	94402
1ehsA	48	27.55	g.2.1.1	43998
1omsA	121	28.91	d.241.2.1	93350
2diqA	110	34.28	b.34.9.1	131531
3bboF	259	34.49		
1e96A	192	48.88	c.37.1.8	32007
1i4tD	192	49.02	c.37.1.8	61731
1s1iC	386	50.11	i.1.1.1	105177
4cpaI	38	57.97	g.3.2.1	44074
1h20A	39	61.59	g.3.2.1	83461
2jp2A	126	71.42		
1ib8A	164	73.27	b.38.2.1,d.52.4.1	71168,71169
2o4xB	91	80.87		
2bgxA	261	81.10	a.20.1.1,d.118.1.1	128504,128505
2e6nA	104	81.99		
2d9rA	104	84.75	b.129.2.1	131350
2vrhA	432	85.04		
2iukA	864	87.99