# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g5vA 88 0.4095 b.34.9.1 60292 1mhnA 59 0.4143 b.34.9.1 84964 2eqkA 85 1.338 2f5kA 102 1.829 b.34.13.3 132995 2dkoB 103 4.275 2qqrA 118 4.435 2hqxA 246 5.541 b.34.9.1 136675 1nmeB 92 6.000 1xnzA 264 6.605 d.127.1.1 115673 1qtnB 95 7.254 1griA 217 7.952 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 2gfaA 119 9.090 b.34.9.1,b.34.9.1 135089,135090 1vqoB 338 9.481 b.43.3.2 120363 1nmsA 249 10.41 c.17.1.1 85879 1o0xA 262 11.04 d.127.1.1 80755 1ehsA 48 14.29 g.2.1.1 43998 2qckA 167 14.39 2j01E 206 15.15 1yoaA 159 15.46 b.45.1.2 123775 1wgsA 133 17.52 b.34.13.3 114622 1danT 80 18.03 b.1.2.1 21953 1fsiA 189 18.03 d.61.1.1 39536 1sc3B 88 19.71 1dz1A 70 20.87 b.34.13.2 37473 1b59A 370 21.81 a.4.5.25,d.127.1.1 16225,41162 2ar9A 278 22.54 1v3fA 120 22.55 a.4.5.31 100289 1ou8A 111 22.64 b.136.1.1 93543 1ox8A 107 24.95 b.136.1.1 93671 2yrvA 117 25.60 2fp3A 316 26.08 1ffkB 338 26.84 b.43.3.2 25719 1pyoB 105 27.44 1vc3B 97 27.69 1q3lA 69 29.86 b.34.13.2 111652 1rovA 857 31.18 a.119.1.1,b.12.1.1 97674,97675 1qfmA 710 32.26 b.69.7.1,c.69.1.4 27673,34641 1qxyA 252 34.04 d.127.1.1 96565 4matA 278 35.21 d.127.1.1 41150 1jj2B 337 35.71 b.43.3.2 63086 3cb0A 173 37.37 3cpnA 330 37.96 1kjwA 295 38.55 b.34.2.1,c.37.1.1 68643,68644 2fb2A 340 39.65 2q83A 346 40.25 1xgsA 295 41.38 a.4.5.25,d.127.1.1 16216,41153 1ibcB 88 41.62 2a25A 193 42.10 1cp3A 277 43.79 c.17.1.1 30992 1smxA 96 45.88 b.40.4.5 105772 1ru8A 232 46.14 c.26.2.1 97849 1z94A 147 46.27 d.129.3.5 124740 2fhdA 153 47.28 1jofA 365 48.14 b.69.10.1 71775 1bn5 478 48.69 1khcA 147 49.77 b.34.9.2 68608 1tr9A 341 50.94 c.1.8.7 112617 1yfnA 118 51.28 b.136.1.1 123080 1dk4A 252 53.26 e.7.1.1 42970 2qnuA 226 53.50 1jxmA 301 53.69 b.34.2.1,c.37.1.1 67420,67421 1kxgA 152 53.72 b.22.1.1 73145 1wu7A 434 54.94 c.51.1.1,d.104.1.1 121275,121276 1gpc 218 55.78 1hoe 74 55.78 1sur 215 56.21 1xpkC 388 57.55 c.95.1.2,c.95.1.2 115747,115748 1ok0A 74 57.57 b.5.1.1 93191 1xpmA 396 58.29 c.95.1.2,c.95.1.2 115759,115760 2a1hA 365 59.32 e.17.1.1 125997 1f5nA 592 62.13 a.114.1.1,c.37.1.8 19077,32152 2p0pA 126 62.31 1b6a 478 64.55 2fmlA 273 64.84 a.4.5.68,d.113.1.6 133778,133779 2hbaA 52 65.85 1i1wA 303 66.00 c.1.8.3 76732 1vfqA 143 66.09 d.109.1.2 120054 1tvzA 388 66.23 c.95.1.2,c.95.1.2 107367,107368 2nu8B 388 67.19 1crzA 403 67.36 b.68.4.1,c.51.2.1 27629,33211 1g6zA 70 68.11 b.34.13.2 60321 2o3iA 405 69.06 2cb9A 244 69.46 2p9wA 334 69.71 1pdqA 72 69.73 b.34.13.2 94590 1ym0B 27 69.83 1b85A 351 69.89 a.93.1.1 18581 2ijrA 300 70.07 1lybA 97 70.16 b.50.1.2 26857 1surA 215 70.88 c.26.2.2 31620 1t0qB 330 71.48 a.25.1.2 106221 2epbA 68 72.13 2b0vA 153 72.50 d.113.1.1 127650 2b2yA 187 73.04 b.34.13.2,b.34.13.2 127754,127755 1xzzA 246 73.54 1jmmA 377 74.58 b.30.6.1 71749 1t0hA 132 75.65 b.34.2.1 106207 2huhA 147 75.98 2fmmA 74 76.75 b.34.13.2 133782 3cewA 125 79.01 5gcnA 166 80.79 d.108.1.1 40807 1dxrL 273 81.18 f.26.1.1 43431 2f1cX 286 83.94 1ng2A 193 84.41 b.34.2.1,b.34.2.1 85660,85661 1z1zA 131 84.54 d.323.1.1 124366 2ivwA 113 84.80 3bzcA 785 86.07 1gheA 177 86.08 d.108.1.1 76222 1b7yA 350 89.96 d.104.1.1 40776