# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g5vA 88 0.2399 b.34.9.1 60292 1mhnA 59 0.3311 b.34.9.1 84964 2f5kA 102 1.324 b.34.13.3 132995 2eqkA 85 1.656 2qqrA 118 2.485 2hqxA 246 4.308 b.34.9.1 136675 2dkoB 103 4.376 1nmeB 92 5.041 2p0pA 126 5.221 1xnzA 264 5.690 d.127.1.1 115673 2gfaA 119 5.808 b.34.9.1,b.34.9.1 135089,135090 1qtnB 95 6.233 2qckA 167 6.588 1yoaA 159 6.769 b.45.1.2 123775 1griA 217 7.347 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 1o0xA 262 7.905 d.127.1.1 80755 1fsiA 189 8.167 d.61.1.1 39536 1danT 80 8.732 b.1.2.1 21953 1v3fA 120 10.09 a.4.5.31 100289 2yrvA 117 11.31 1nmsA 249 11.45 c.17.1.1 85879 1ehsA 48 12.84 g.2.1.1 43998 1vqoB 338 13.17 b.43.3.2 120363 1sc3B 88 16.52 1wgsA 133 16.67 b.34.13.3 114622 1rovA 857 16.89 a.119.1.1,b.12.1.1 97674,97675 2j01E 206 18.08 3cb0A 173 18.27 3cewA 125 21.42 2fp3A 316 21.69 1q3lA 69 22.05 b.34.13.2 111652 1qfmA 710 22.91 b.69.7.1,c.69.1.4 27673,34641 2ar9A 278 23.20 1vc3B 97 23.34 1b59A 370 24.50 a.4.5.25,d.127.1.1 16225,41162 2q83A 346 26.34 1pyoB 105 26.82 2fhdA 153 26.91 2fb2A 340 26.99 2nu8B 388 27.17 1xzzA 246 27.34 4matA 278 27.49 d.127.1.1 41150 1wu7A 434 28.37 c.51.1.1,d.104.1.1 121275,121276 5gcnA 166 30.41 d.108.1.1 40807 1khcA 147 30.84 b.34.9.2 68608 1ibcB 88 31.52 3cpnA 330 33.24 1xgsA 295 33.36 a.4.5.25,d.127.1.1 16216,41153 1ru8A 232 34.49 c.26.2.1 97849 2ijrA 300 34.52 1ou8A 111 35.16 b.136.1.1 93543 2fmlA 273 36.38 a.4.5.68,d.113.1.6 133778,133779 1kxgA 152 38.74 b.22.1.1 73145 1ox8A 107 38.80 b.136.1.1 93671 1b7yA 350 39.46 d.104.1.1 40776 1crzA 403 39.68 b.68.4.1,c.51.2.1 27629,33211 1tr9A 341 40.90 c.1.8.7 112617 2hljA 157 45.18 d.38.1.1 136570 1ok0A 74 46.52 b.5.1.1 93191 1dk4A 252 46.71 e.7.1.1 42970 3b9tA 484 47.09 2qnuA 226 47.16 2d5mA 190 47.46 2o3iA 405 47.97 1jofA 365 48.01 b.69.10.1 71775 2p6cA 137 48.60 1cp3A 277 49.09 c.17.1.1 30992 2ii1A 301 49.33 1z4rA 168 50.47 d.108.1.1 124444 2b2yA 187 50.53 b.34.13.2,b.34.13.2 127754,127755 1qxyA 252 50.60 d.127.1.1 96565 1hoe 74 51.11 1smxA 96 51.34 b.40.4.5 105772 2b7yB 51 52.34 1d2oA 187 53.26 b.3.5.1,b.3.5.1 22625,22626 1z94A 147 53.36 d.129.3.5 124740 2p9wA 334 53.86 1g6zA 70 54.11 b.34.13.2 60321 1z7mA 344 56.70 d.104.1.1 124632 1ycdA 243 56.76 1sur 215 57.09 1bn5 478 57.88 1b85A 351 58.06 a.93.1.1 18581 1jj2B 337 58.34 b.43.3.2 63086 1qrzA 246 58.40 b.47.1.2 26366 3brnA 157 58.85 1f5nA 592 59.35 a.114.1.1,c.37.1.8 19077,32152 2bi0A 337 59.38 d.38.1.4,d.38.1.4 128565,128566 1aohA 147 59.77 b.2.2.2 22401 1xpkC 388 61.19 c.95.1.2,c.95.1.2 115747,115748 2hd5A 359 62.83 2i04A 85 63.28 2a25A 193 63.40 1xpmA 396 64.13 c.95.1.2,c.95.1.2 115759,115760 2hbaA 52 64.48 2imgA 151 64.91 1dz1A 70 65.08 b.34.13.2 37473 1b6a 478 65.19 1nycA 111 66.31 b.61.2.2 92336 1o7dE 126 66.50 1z85A 234 66.94 1kjwA 295 67.36 b.34.2.1,c.37.1.1 68643,68644 1z6jT 211 67.70 b.1.2.1,b.1.2.1 124527,124528 2qsxA 218 67.81 2r98A 456 67.95 1amxA 180 68.77 b.2.3.1 22410 1lybA 97 68.87 b.50.1.2 26857 1xu1A 138 69.04 b.22.1.1 116033 2epbA 68 69.19 2q2kA 70 69.22 1pdqA 72 70.31 b.34.13.2 94590 1thqA 170 70.76 f.4.1.2 106920 1tvzA 388 70.83 c.95.1.2,c.95.1.2 107367,107368 1gpc 218 70.88 1kaoA 167 71.07 c.37.1.8 32014 2ivwA 113 71.20 2rfkB 53 71.27 1vbvA 105 72.87 b.34.17.1 119965 1ysjA 404 73.31 c.56.5.4,d.58.19.1 123975,123976 2uzcA 88 74.06 1y6kR 214 74.10 b.1.2.1,b.1.2.1 122663,122664 2trcP 217 74.83 c.47.1.6 33051 2pktA 91 76.35 2ee1A 64 79.28 1x1rA 178 79.50 c.37.1.8 121595 1wi5A 119 79.90 b.40.4.5 114661 2cb9A 244 80.09 1surA 215 80.57 c.26.2.2 31620 2vphA 100 81.09 1v7nV 163 81.31 a.26.1.2 100476 2ja9A 175 81.95 2cu5A 129 82.95 1k81A 36 83.14 g.59.1.1 72136 1qh0A 295 83.43 b.43.4.2,c.25.1.1 68891,68892 1yw4A 341 83.53 c.56.5.7 124131 2h0vA 338 84.31 1ng2A 193 84.40 b.34.2.1,b.34.2.1 85660,85661 1yfnA 118 84.95 b.136.1.1 123080 1yreA 197 85.86 d.108.1.1 123919 1zboA 210 86.81 b.122.1.10 124859 2bklA 695 87.44 1f1gA 154 87.60 b.1.8.1 76153 2fmmA 74 88.42 b.34.13.2 133782 1xuvA 178 88.43 d.129.3.5 116069 1gheA 177 88.59 d.108.1.1 76222 1hjdA 101 89.23 b.34.2.1 65846 1ygtA 111 89.83