# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.3748 b.34.9.1 84964 1g5vA 88 0.4972 b.34.9.1 60292 2qqrA 118 0.8702 2f5kA 102 1.405 b.34.13.3 132995 2gfaA 119 2.646 b.34.9.1,b.34.9.1 135089,135090 2eqkA 85 3.659 1griA 217 5.244 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 2dkoB 103 6.126 1nmeB 92 6.824 2p0pA 126 7.354 1qtnB 95 7.447 2qckA 167 8.788 1yoaA 159 9.292 b.45.1.2 123775 1vc3B 97 9.631 1wgsA 133 12.64 b.34.13.3 114622 2hqxA 246 14.20 b.34.9.1 136675 1i1wA 303 14.84 c.1.8.3 76732 3cb0A 173 15.29 1xnzA 264 16.31 d.127.1.1 115673 1q3lA 69 16.41 b.34.13.2 111652 1danT 80 16.61 b.1.2.1 21953 1nmsA 249 16.68 c.17.1.1 85879 2yrvA 117 19.39 2fb2A 340 19.96 1tplA 426 21.46 c.67.1.2 34387 1sc3B 88 21.53 1wu7A 434 21.93 c.51.1.1,d.104.1.1 121275,121276 2fmlA 273 22.70 a.4.5.68,d.113.1.6 133778,133779 2d5mA 190 23.06 3bzcA 785 23.11 1d2oA 187 23.59 b.3.5.1,b.3.5.1 22625,22626 1b59A 370 25.40 a.4.5.25,d.127.1.1 16225,41162 1qxyA 252 25.97 d.127.1.1 96565 1pyoB 105 26.99 2fhdA 153 27.29 2pbnA 313 29.23 1wchA 315 29.33 c.45.1.2 114508 1ysjA 404 30.33 c.56.5.4,d.58.19.1 123975,123976 1xgsA 295 30.58 a.4.5.25,d.127.1.1 16216,41153 1o22A 170 31.53 d.238.1.1 86557 5gcnA 166 31.75 d.108.1.1 40807 1fsiA 189 32.87 d.61.1.1 39536 1ibcB 88 32.87 1qpaA 345 33.21 a.93.1.1 18585 1dz1A 70 33.23 b.34.13.2 37473 1jxmA 301 33.50 b.34.2.1,c.37.1.1 67420,67421 1z94A 147 33.58 d.129.3.5 124740 2epbA 68 34.02 1ehsA 48 34.79 g.2.1.1 43998 3cpnA 330 36.27 1yreA 197 36.42 d.108.1.1 123919 1dxrL 273 37.78 f.26.1.1 43431 1o0xA 262 38.19 d.127.1.1 80755 1vqoB 338 39.46 b.43.3.2 120363 2hbaA 52 40.12 2ivwA 113 40.43 1rzhL 281 40.58 f.26.1.1 98164 6prcL 273 40.85 f.26.1.1 43434 2i8tA 167 41.16 2b2yA 187 41.77 b.34.13.2,b.34.13.2 127754,127755 1eysL 280 41.81 f.26.1.1 43515 1g4wR 383 42.24 a.24.11.1,c.45.1.2 16644,32692 1v3fA 120 42.84 a.4.5.31 100289 2ar9A 278 43.21 1ou8A 111 43.91 b.136.1.1 93543 1kjwA 295 44.91 b.34.2.1,c.37.1.1 68643,68644 1uasA 362 45.69 b.71.1.1,c.1.8.1 88388,88389 2p3yA 491 45.93 1ox8A 107 46.68 b.136.1.1 93671 1m6pA 152 47.06 b.64.1.1 27519 1we9A 64 47.92 g.50.1.2 114549 1jj2P 95 48.00 b.34.5.1 63101 2o3iA 405 48.50 1zsyA 357 48.69 1qfmA 710 48.71 b.69.7.1,c.69.1.4 27673,34641 2ee1A 64 48.75 1z85A 234 49.33 3cddA 361 51.05 4matA 278 51.25 d.127.1.1 41150 1nycA 111 51.26 b.61.2.2 92336 1b85A 351 51.37 a.93.1.1 18581 2q83A 346 51.52 1wi5A 119 51.56 b.40.4.5 114661 1gpc 218 52.42 2rfkB 53 52.72 1ym0B 27 52.72 1xuvA 178 53.20 d.129.3.5 116069 1r3nA 462 53.69 c.56.5.4,d.58.19.1 96945,96946 2rl8A 154 54.87 2i75A 320 55.12 1rzhM 307 55.66 f.26.1.1 98165 1wruA 379 55.68 1ycdA 243 56.18 2hp4A 114 57.05 3ct9A 356 57.68 2b7yB 51 58.91 3craA 265 59.09 1khcA 147 59.52 b.34.9.2 68608 2vcyA 344 60.15 1ru8A 232 60.31 c.26.2.1 97849 1b9cA 236 60.49 d.22.1.1 38358 1kzlA 208 61.14 b.43.4.3,b.43.4.3 77635,77636 1pdqA 72 61.24 b.34.13.2 94590 1zc3B 113 61.40 b.55.1.1 124881 2j01E 206 61.41 2fh7A 595 61.85 1gu7A 364 62.07 b.35.1.2,c.2.1.1 83321,83322 1jtdB 273 63.00 b.69.5.2 67265 1xn5A 146 64.10 d.129.3.5 115574 2cb9A 244 64.66 3bjvA 161 65.29 2imgA 151 65.40 2b3oA 532 65.67 1a12A 413 66.11 b.69.5.1 27663 2qsxA 218 66.43 3cewA 125 66.50 1x3mA 415 67.18 c.55.1.2,c.55.1.2 121664,121665 1at0 145 67.27 1xzzA 246 67.58 2yueA 168 67.91 2a1hA 365 68.25 e.17.1.1 125997 1kaoA 167 69.57 c.37.1.8 32014 1aohA 147 69.84 b.2.2.2 22401 2eqjA 66 70.02 1qtsA 247 70.82 b.1.10.1,d.105.1.1 22313,40789 1eujA 166 71.73 b.40.4.4 25316 2pa5A 314 71.93 1xwvA 129 72.04 b.1.18.7 116134 2b49A 287 72.17 3b9tA 484 72.32 2bkdN 134 72.40 2i5nL 273 72.54 f.26.1.1 137066 1p15A 253 72.76 c.45.1.2 93894 1z7mA 344 72.86 d.104.1.1 124632 1jmmA 377 73.83 b.30.6.1 71749 1ybdA 239 73.91 c.73.1.3 122884 1cp3A 277 74.76 c.17.1.1 30992 1sur 215 74.79 1pfbA 55 74.88 b.34.13.2 94655 1hoe 74 75.32 1afrA 345 75.54 a.25.1.2 16805 2hd5A 359 75.97 1z4rA 168 76.01 d.108.1.1 124444 1gheA 177 76.04 d.108.1.1 76222 2nu8B 388 76.20 2fp3A 316 76.66 1crzA 403 76.87 b.68.4.1,c.51.2.1 27629,33211 2jtmA 60 78.54 2bzlA 325 78.73 1nj4A 363 79.01 b.105.1.1,e.3.1.1 80545,80546 1b7yA 350 79.04 d.104.1.1 40776 1jxgA 100 79.46 b.6.1.1 67413 2i5nM 323 79.65 f.26.1.1 137067 2qjoA 341 80.52 1rovA 857 80.75 a.119.1.1,b.12.1.1 97674,97675 1s21A 206 83.12 d.166.1.4 105222 1g8kB 133 83.16 b.33.1.1 24435 1ok0A 74 83.66 b.5.1.1 93191 1kxgA 152 83.87 b.22.1.1 73145 1xt5A 135 84.43 1uh4A 637 84.43 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1kkeA 210 84.63 b.83.1.2,b.21.1.2 68669,68670 1rxzA 245 85.16 d.131.1.2,d.131.1.2 98067,98068 1xxpA 306 85.27 c.45.1.2 122423 2bv5A 282 85.62 2z2iA 191 88.21 1yge 839 88.22 1ffkB 338 88.67 b.43.3.2 25719 1oxdA 227 88.74 d.22.1.1 93687 2b0vA 153 89.36 d.113.1.1 127650 1z65A 30 89.51 2rh2A 62 89.60 1ptvA 321 89.87 c.45.1.2 32665