# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g5vA 88 0.6953 b.34.9.1 60292 1mhnA 59 0.7411 b.34.9.1 84964 2f5kA 102 2.817 b.34.13.3 132995 2qqrA 118 3.180 2dkoB 103 3.246 1nmeB 92 4.168 1qtnB 95 4.495 2eqkA 85 5.231 1xnzA 264 7.373 d.127.1.1 115673 2gfaA 119 7.884 b.34.9.1,b.34.9.1 135089,135090 1vqoB 338 8.546 b.43.3.2 120363 1ehsA 48 8.955 g.2.1.1 43998 1griA 217 10.11 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 1nmsA 249 10.19 c.17.1.1 85879 2fp3A 316 11.20 1sc3B 88 12.78 2hqxA 246 14.63 b.34.9.1 136675 1o0xA 262 14.96 d.127.1.1 80755 1pyoB 105 15.06 2j01E 206 16.62 2ar9A 278 16.73 1b59A 370 18.90 a.4.5.25,d.127.1.1 16225,41162 1danT 80 19.76 b.1.2.1 21953 2qckA 167 19.81 1v3fA 120 19.91 a.4.5.31 100289 1yoaA 159 21.11 b.45.1.2 123775 1ibcB 88 21.17 1ou8A 111 25.71 b.136.1.1 93543 2q83A 346 26.01 1fsiA 189 26.59 d.61.1.1 39536 1ffkB 338 27.76 b.43.3.2 25719 1dz1A 70 27.79 b.34.13.2 37473 1ox8A 107 28.13 b.136.1.1 93671 1qxyA 252 28.21 d.127.1.1 96565 1jj2B 337 28.83 b.43.3.2 63086 1q3lA 69 30.22 b.34.13.2 111652 2yrvA 117 30.69 1wgsA 133 31.17 b.34.13.3 114622 1vc3B 97 32.46 1b9cA 236 32.77 d.22.1.1 38358 2qnuA 226 32.91 1xgsA 295 33.88 a.4.5.25,d.127.1.1 16216,41153 3cb0A 173 35.23 4matA 278 36.35 d.127.1.1 41150 1i1wA 303 36.36 c.1.8.3 76732 1cp3A 277 37.25 c.17.1.1 30992 1ysjA 404 37.58 c.56.5.4,d.58.19.1 123975,123976 2fhdA 153 38.16 1rovA 857 39.40 a.119.1.1,b.12.1.1 97674,97675 2fb2A 340 40.70 1ru8A 232 42.93 c.26.2.1 97849 1j7iA 264 43.17 d.144.1.6 62694 1ckxA 26 43.23 j.35.1.1 46272 1izlA 360 44.30 i.5.1.1 76994 1z1zA 131 44.78 d.323.1.1 124366 1crzA 403 44.84 b.68.4.1,c.51.2.1 27629,33211 2zblA 421 44.97 1eysL 280 45.78 f.26.1.1 43515 1ym0B 27 46.15 1sur 215 46.19 1uisA 231 46.58 d.22.1.1 99431 2cb9A 244 46.72 2fmlA 273 47.58 a.4.5.68,d.113.1.6 133778,133779 1dxrL 273 47.72 f.26.1.1 43431 1bn5 478 48.18 2p0pA 126 50.49 1yfnA 118 51.11 b.136.1.1 123080 1tr9A 341 52.70 c.1.8.7 112617 6prcL 273 53.55 f.26.1.1 43434 1h6rA 236 55.95 d.22.1.1 65683 1rzhL 281 56.50 f.26.1.1 98164 1rzhM 307 60.19 f.26.1.1 98165 2o3iA 405 60.36 1ycdA 243 60.56 2e3zA 465 63.08 1surA 215 63.55 c.26.2.2 31620 1rhsA 296 63.65 c.46.1.2,c.46.1.2 32703,32704 1wu7A 434 64.19 c.51.1.1,d.104.1.1 121275,121276 3cewA 125 64.33 1e0cA 271 64.78 c.46.1.2,c.46.1.2 32717,32718 2nu8B 388 64.98 1khcA 147 65.66 b.34.9.2 68608 1jofA 365 65.80 b.69.10.1 71775 2ovsA 118 66.06 1oxdA 227 66.13 d.22.1.1 93687 1ok0A 74 69.42 b.5.1.1 93191 1amoA 615 69.47 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 3cpnA 330 69.52 1gpc 218 70.10 1hoe 74 70.68 1uasA 362 70.94 b.71.1.1,c.1.8.1 88388,88389 1rhs 296 71.16 1b85A 351 71.72 a.93.1.1 18581 1xzzA 246 73.26 2cu5A 129 73.76 1jtdB 273 75.96 b.69.5.2 67265 1kaoA 167 76.30 c.37.1.8 32014 2f1cX 286 76.33 2ijrA 300 76.42 1pdqA 72 77.91 b.34.13.2 94590 1dk4A 252 78.15 e.7.1.1 42970 1tplA 426 78.72 c.67.1.2 34387 1b6a 478 78.72 1qfmA 710 79.33 b.69.7.1,c.69.1.4 27673,34641 1zin 217 79.39 3be4A 217 80.15 1uarA 285 80.32 c.46.1.2,c.46.1.2 107762,107763 1vbuA 328 80.47 c.1.8.3 119963 1akyA 220 80.99 c.37.1.1,g.41.2.1 31896,45197 2p6cA 137 81.70 2hbaA 52 81.88 2eu8A 216 83.14 1xpmA 396 83.50 c.95.1.2,c.95.1.2 115759,115760 2huhA 147 84.38 1lybA 97 85.66 b.50.1.2 26857 2rfkB 53 85.69 1nycA 111 86.47 b.61.2.2 92336 1x1rA 178 86.78 c.37.1.8 121595 1tvzA 388 86.79 c.95.1.2,c.95.1.2 107367,107368 1z65A 30 86.96 2b0vA 153 87.65 d.113.1.1 127650 1rxzA 245 87.84 d.131.1.2,d.131.1.2 98067,98068 1xpkC 388 87.95 c.95.1.2,c.95.1.2 115747,115748 1lwbA 122 89.55 a.133.1.3 84728