# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g5vA 88 0.5609 b.34.9.1 60292 1mhnA 59 0.5899 b.34.9.1 84964 2qqrA 118 2.739 2f5kA 102 2.768 b.34.13.3 132995 2dkoB 103 3.742 1nmeB 92 4.600 2eqkA 85 5.000 1qtnB 95 5.168 1vqoB 338 5.638 b.43.3.2 120363 1xnzA 264 5.859 d.127.1.1 115673 2gfaA 119 7.085 b.34.9.1,b.34.9.1 135089,135090 1griA 217 7.637 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 2hqxA 246 8.462 b.34.9.1 136675 1o0xA 262 10.11 d.127.1.1 80755 1nmsA 249 10.82 c.17.1.1 85879 1ehsA 48 12.28 g.2.1.1 43998 2j01E 206 13.31 2qckA 167 14.22 1sc3B 88 15.24 1danT 80 16.30 b.1.2.1 21953 1yoaA 159 16.61 b.45.1.2 123775 1b59A 370 16.82 a.4.5.25,d.127.1.1 16225,41162 2fp3A 316 17.10 1pyoB 105 17.84 1jj2B 337 18.17 b.43.3.2 63086 1v3fA 120 20.50 a.4.5.31 100289 2ar9A 278 21.76 1ffkB 338 22.44 b.43.3.2 25719 2yrvA 117 25.13 4matA 278 25.91 d.127.1.1 41150 1wgsA 133 26.04 b.34.13.3 114622 1xgsA 295 26.06 a.4.5.25,d.127.1.1 16216,41153 1qxyA 252 26.39 d.127.1.1 96565 2q83A 346 27.43 1vc3B 97 27.69 3cb0A 173 28.02 1fsiA 189 28.27 d.61.1.1 39536 1ibcB 88 29.05 1ox8A 107 29.69 b.136.1.1 93671 1rovA 857 31.46 a.119.1.1,b.12.1.1 97674,97675 1dz1A 70 32.32 b.34.13.2 37473 1ou8A 111 32.55 b.136.1.1 93543 1i1wA 303 32.56 c.1.8.3 76732 1q3lA 69 35.09 b.34.13.2 111652 1wu7A 434 38.87 c.51.1.1,d.104.1.1 121275,121276 1ckxA 26 39.86 j.35.1.1 46272 1cp3A 277 40.03 c.17.1.1 30992 2fb2A 340 40.81 2fhdA 153 41.11 1ru8A 232 41.99 c.26.2.1 97849 1bn5 478 42.26 2fmlA 273 42.90 a.4.5.68,d.113.1.6 133778,133779 2zblA 421 43.34 1izlA 360 44.31 i.5.1.1 76994 1b9cA 236 44.61 d.22.1.1 38358 1xpkC 388 45.20 c.95.1.2,c.95.1.2 115747,115748 1jofA 365 46.79 b.69.10.1 71775 1ym0B 27 46.82 2nu8B 388 46.97 3cpnA 330 47.02 1khcA 147 47.59 b.34.9.2 68608 1z1zA 131 49.26 d.323.1.1 124366 2qnuA 226 49.44 2cb9A 244 49.69 1crzA 403 50.38 b.68.4.1,c.51.2.1 27629,33211 2p0pA 126 50.93 1xpmA 396 51.93 c.95.1.2,c.95.1.2 115759,115760 1ysjA 404 53.12 c.56.5.4,d.58.19.1 123975,123976 1tvzA 388 53.32 c.95.1.2,c.95.1.2 107367,107368 1kjwA 295 54.10 b.34.2.1,c.37.1.1 68643,68644 1tr9A 341 54.12 c.1.8.7 112617 1qfmA 710 57.79 b.69.7.1,c.69.1.4 27673,34641 1kxgA 152 59.90 b.22.1.1 73145 2p6cA 137 60.05 1sur 215 60.14 1b7yA 350 60.31 d.104.1.1 40776 2a1hA 365 60.37 e.17.1.1 125997 1eysL 280 60.75 f.26.1.1 43515 1b6a 478 61.05 1tplA 426 62.20 c.67.1.2 34387 1dxrL 273 62.26 f.26.1.1 43431 6prcL 273 63.88 f.26.1.1 43434 1yfnA 118 64.59 b.136.1.1 123080 3cewA 125 65.00 1uisA 231 65.12 d.22.1.1 99431 1gpc 218 65.49 1xzzA 246 65.72 1h6rA 236 65.76 d.22.1.1 65683 1ycdA 243 66.54 1nycA 111 68.08 b.61.2.2 92336 1rxzA 245 69.00 d.131.1.2,d.131.1.2 98067,98068 1j7iA 264 69.10 d.144.1.6 62694 2cu5A 129 69.41 2b0vA 153 69.53 d.113.1.1 127650 1dk4A 252 70.28 e.7.1.1 42970 2ijrA 300 70.62 2o3iA 405 72.25 1oxdA 227 72.93 d.22.1.1 93687 1jxmA 301 73.72 b.34.2.1,c.37.1.1 67420,67421 2e3zA 465 75.89 1rzhL 281 75.95 f.26.1.1 98164 3b9tA 484 76.43 1kaoA 167 76.53 c.37.1.8 32014 2a25A 193 76.68 1jmmA 377 79.71 b.30.6.1 71749 2rfkB 53 79.88 1ok0A 74 80.73 b.5.1.1 93191 1hoe 74 82.97 2p3yA 491 83.00 1surA 215 83.04 c.26.2.2 31620 1x1rA 178 83.68 c.37.1.8 121595 1lybA 97 84.41 b.50.1.2 26857 1bngA 110 84.95 d.1.1.2 36184 1akyA 220 85.47 c.37.1.1,g.41.2.1 31896,45197 1rhsA 296 85.87 c.46.1.2,c.46.1.2 32703,32704 1z7mA 344 85.90 d.104.1.1 124632 2ovsA 118 87.77 2hbaA 52 87.84 1rzhM 307 87.94 f.26.1.1 98165 1pdqA 72 88.05 b.34.13.2 94590 1zin 217 89.01 2ivwA 113 89.08 2eu8A 216 89.46