# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	0.8431	b.34.9.1	84964
1g5vA	88	1.142	b.34.9.1	60292
2f5kA	102	4.209	b.34.13.3	132995
2dkoB	103	5.085		
1nmsA	249	9.080	c.17.1.1	85879
2qckA	167	9.839		
1qtnB	95	10.17		
1nmeB	92	10.46		
1yoaA	159	11.80	b.45.1.2	123775
2fp3A	316	13.08		
2eqkA	85	14.51		
1cp3A	277	20.05	c.17.1.1	30992
1vqoB	338	20.19	b.43.3.2	120363
1danT	80	21.63	b.1.2.1	21953
2ar9A	278	23.39		
1dz1A	70	26.91	b.34.13.2	37473
1z1zA	131	28.70	d.323.1.1	124366
1pyoB	105	34.89		
3cb0A	173	35.63		
1ysjA	404	36.31	c.56.5.4,d.58.19.1	123975,123976
2yrvA	117	37.88		
2qqrA	118	39.51		
1griA	217	41.59	b.34.2.1,b.34.2.1,d.93.1.1	24531,24532,40473
2gfaA	119	45.88	b.34.9.1,b.34.9.1	135089,135090
1q3lA	69	49.58	b.34.13.2	111652
1h6rA	236	52.61	d.22.1.1	65683
1ou8A	111	54.39	b.136.1.1	93543
2p0pA	126	57.99		
1ehsA	48	58.18	g.2.1.1	43998
1ffkB	338	61.05	b.43.3.2	25719
1sc3B	88	61.74		
1ox8A	107	62.28	b.136.1.1	93671
1b9cA	236	63.20	d.22.1.1	38358
2j01E	206	63.25		
1khcA	147	63.50	b.34.9.2	68608
2hqxA	246	63.55	b.34.9.1	136675
1jj2B	337	64.24	b.43.3.2	63086
1oxdA	227	67.80	d.22.1.1	93687
1ibcB	88	68.20		
1yreA	197	68.34	d.108.1.1	123919
1rzhL	281	68.92	f.26.1.1	98164
1dxrL	273	69.72	f.26.1.1	43431
1uisA	231	69.95	d.22.1.1	99431
2b2yA	187	76.98	b.34.13.2,b.34.13.2	127754,127755
1ga8A	311	79.87	c.68.1.4	34516
1y6kR	214	83.60	b.1.2.1,b.1.2.1	122663,122664
1aohA	147	83.64	b.2.2.2	22401
2fmmA	74	84.58	b.34.13.2	133782
1rzhM	307	86.35	f.26.1.1	98165