# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.4292 b.34.9.1 84964 1g5vA 88 0.4358 b.34.9.1 60292 2f5kA 102 1.341 b.34.13.3 132995 2qqrA 118 2.699 2eqkA 85 3.069 1griA 217 4.906 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 2gfaA 119 4.910 b.34.9.1,b.34.9.1 135089,135090 2dkoB 103 5.327 1nmeB 92 5.448 2qckA 167 6.546 1xnzA 264 6.605 d.127.1.1 115673 2hqxA 246 6.899 b.34.9.1 136675 1yoaA 159 8.456 b.45.1.2 123775 1o0xA 262 8.583 d.127.1.1 80755 1qtnB 95 9.224 1danT 80 9.349 b.1.2.1 21953 1vqoB 338 9.547 b.43.3.2 120363 1fsiA 189 10.18 d.61.1.1 39536 2j01E 206 12.58 3cb0A 173 12.60 1ehsA 48 12.79 g.2.1.1 43998 1nmsA 249 13.00 c.17.1.1 85879 1q3lA 69 13.86 b.34.13.2 111652 1v3fA 120 16.75 a.4.5.31 100289 1b59A 370 18.66 a.4.5.25,d.127.1.1 16225,41162 2q83A 346 18.86 1kjwA 295 21.16 b.34.2.1,c.37.1.1 68643,68644 1wgsA 133 21.24 b.34.13.3 114622 1vc3B 97 24.06 1wu7A 434 24.53 c.51.1.1,d.104.1.1 121275,121276 1ou8A 111 26.27 b.136.1.1 93543 1sc3B 88 26.64 2ar9A 278 26.67 1ox8A 107 27.77 b.136.1.1 93671 3cpnA 330 28.61 1qfmA 710 28.66 b.69.7.1,c.69.1.4 27673,34641 1dz1A 70 30.02 b.34.13.2 37473 1rovA 857 30.29 a.119.1.1,b.12.1.1 97674,97675 1jj2B 337 30.53 b.43.3.2 63086 1xpmA 396 30.84 c.95.1.2,c.95.1.2 115759,115760 1pyoB 105 31.64 1xpkC 388 31.98 c.95.1.2,c.95.1.2 115747,115748 2fhdA 153 32.89 1ffkB 338 32.91 b.43.3.2 25719 2fb2A 340 34.83 2yrvA 117 37.62 1dk4A 252 37.66 e.7.1.1 42970 2p0pA 126 37.74 1kxgA 152 38.09 b.22.1.1 73145 2a1hA 365 38.10 e.17.1.1 125997 1tvzA 388 38.48 c.95.1.2,c.95.1.2 107367,107368 1crzA 403 39.02 b.68.4.1,c.51.2.1 27629,33211 2ijrA 300 39.85 1jxmA 301 40.13 b.34.2.1,c.37.1.1 67420,67421 1ym0B 27 40.59 1thqA 170 41.12 f.4.1.2 106920 1jofA 365 41.21 b.69.10.1 71775 1tr9A 341 44.24 c.1.8.7 112617 1pdqA 72 44.72 b.34.13.2 94590 1ckxA 26 44.73 j.35.1.1 46272 2fp3A 316 47.06 1cp3A 277 47.47 c.17.1.1 30992 1xgsA 295 47.48 a.4.5.25,d.127.1.1 16216,41153 1y6kR 214 47.74 b.1.2.1,b.1.2.1 122663,122664 4matA 278 48.10 d.127.1.1 41150 3cewA 125 49.06 2d5mA 190 49.99 1xzzA 246 50.18 1sur 215 50.32 2a25A 193 50.61 1qxyA 252 50.64 d.127.1.1 96565 1z94A 147 51.06 d.129.3.5 124740 1yfnA 118 51.91 b.136.1.1 123080 1yreA 197 52.06 d.108.1.1 123919 1bn5 478 52.20 1khcA 147 52.87 b.34.9.2 68608 1pfbA 55 53.92 b.34.13.2 94655 1ru8A 232 55.21 c.26.2.1 97849 1uisA 231 55.65 d.22.1.1 99431 1b2oA 54 55.83 g.41.5.1 45233 1z4rA 168 56.85 d.108.1.1 124444 1ysjA 404 57.26 c.56.5.4,d.58.19.1 123975,123976 1z1zA 131 57.72 d.323.1.1 124366 1rzhL 281 58.19 f.26.1.1 98164 1dxrL 273 59.34 f.26.1.1 43431 3bzcA 785 59.83 1z85A 234 59.85 2fmlA 273 60.19 a.4.5.68,d.113.1.6 133778,133779 1igqA 62 60.20 b.34.1.3 66130 2b2yA 187 60.49 b.34.13.2,b.34.13.2 127754,127755 1z7mA 344 60.55 d.104.1.1 124632 2imgA 151 61.57 2f1cX 286 62.94 2qnuA 226 63.05 1aohA 147 63.41 b.2.2.2 22401 1b13A 54 63.53 g.41.5.1 45227 1uasA 362 63.90 b.71.1.1,c.1.8.1 88388,88389 1b7yA 350 64.73 d.104.1.1 40776 1kaoA 167 65.39 c.37.1.8 32014 1surA 215 65.79 c.26.2.2 31620 2epbA 68 65.92 1o59A 355 66.12 b.18.1.22,b.18.1.22 92495,92496 2cb9A 244 66.90 1ibcB 88 67.04 3b9tA 484 67.60 1rb9 53 68.71 1b2jA 54 69.01 g.41.5.1 45231 1bq9A 54 69.12 g.41.5.1 45238 1b6a 478 69.75 1ok0A 74 69.91 b.5.1.1 93191 1rxzA 245 70.35 d.131.1.2,d.131.1.2 98067,98068 2hljA 157 70.40 d.38.1.1 136570 2nu8B 388 71.29 1i1wA 303 71.35 c.1.8.3 76732 2o3iA 405 71.54 1bngA 110 71.99 d.1.1.2 36184 1jmmA 377 73.69 b.30.6.1 71749 1ng2A 193 75.90 b.34.2.1,b.34.2.1 85660,85661 1qmyA 167 76.11 d.3.1.2 37094 2bi0A 337 76.21 d.38.1.4,d.38.1.4 128565,128566 1bq8A 54 76.37 g.41.5.1 45237 1ycdA 243 76.45 1z6jT 211 76.80 b.1.2.1,b.1.2.1 124527,124528 2ee1A 64 77.07 2p6cA 137 77.57 1vfqA 143 78.30 d.109.1.2 120054 1wchA 315 78.34 c.45.1.2 114508 2ja9A 175 78.69 1hoe 74 78.71 1brfA 53 79.58 g.41.5.1 45236 1kzlA 208 79.72 b.43.4.3,b.43.4.3 77635,77636 1wv9A 94 79.99 2rfkB 53 80.59 6prcL 273 81.60 f.26.1.1 43434 2hbaA 52 81.72 1danU 121 81.79 b.1.2.1 21954 1m6pA 152 82.80 b.64.1.1 27519 1tplA 426 83.59 c.67.1.2 34387 1t0hA 132 83.92 b.34.2.1 106207 2coiA 386 84.97 2qh7A 76 85.63 1rzhM 307 85.78 f.26.1.1 98165 1eysL 280 85.82 f.26.1.1 43515 1zsyA 357 86.13 1xu1A 138 86.26 b.22.1.1 116033 1nycA 111 86.43 b.61.2.2 92336 1g4wR 383 86.95 a.24.11.1,c.45.1.2 16644,32692 5gcnA 166 87.16 d.108.1.1 40807 2fmmA 74 87.22 b.34.13.2 133782 1c24A 263 87.46 d.127.1.1 41148 2d13A 227 88.07 c.26.2.1 131121 1d2oA 187 88.09 b.3.5.1,b.3.5.1 22625,22626 1f5nA 592 88.24 a.114.1.1,c.37.1.8 19077,32152 1b9cA 236 89.07 d.22.1.1 38358