# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g5vA	88	0.9733	b.34.9.1	60292
1mhnA	59	1.185	b.34.9.1	84964
2eqkA	85	4.739		
2f5kA	102	5.625	b.34.13.3	132995
2qqrA	118	7.925		
2dkoB	103	8.015		
1nmeB	92	10.01		
1xnzA	264	11.09	d.127.1.1	115673
2gfaA	119	11.69	b.34.9.1,b.34.9.1	135089,135090
1qtnB	95	13.29		
1ehsA	48	15.42	g.2.1.1	43998
1o0xA	262	19.38	d.127.1.1	80755
1vqoB	338	19.55	b.43.3.2	120363
2hqxA	246	19.58	b.34.9.1	136675
1danT	80	20.30	b.1.2.1	21953
2qckA	167	20.44		
1griA	217	22.14	b.34.2.1,b.34.2.1,d.93.1.1	24531,24532,40473
2j01E	206	22.52		
1nmsA	249	28.59	c.17.1.1	85879
1sc3B	88	29.22		
2yrvA	117	30.61		
1v3fA	120	31.25	a.4.5.31	100289
1b59A	370	34.73	a.4.5.25,d.127.1.1	16225,41162
2fp3A	316	37.53		
2p0pA	126	37.84		
1fsiA	189	37.87	d.61.1.1	39536
1pyoB	105	39.29		
1vc3B	97	39.99		
3cb0A	173	43.35		
1yoaA	159	43.45	b.45.1.2	123775
1b7yA	350	43.69	d.104.1.1	40776
2ar9A	278	46.47		
2q83A	346	47.47		
2cb9A	244	47.91		
1z1zA	131	50.78	d.323.1.1	124366
1dxrL	273	50.81	f.26.1.1	43431
3cewA	125	51.29		
2fb2A	340	51.66		
4matA	278	53.10	d.127.1.1	41150
1jofA	365	55.86	b.69.10.1	71775
1i1wA	303	57.89	c.1.8.3	76732
1ibcB	88	58.04		
1eysL	280	58.36	f.26.1.1	43515
1wu7A	434	60.22	c.51.1.1,d.104.1.1	121275,121276
1rzhL	281	60.66	f.26.1.1	98164
6prcL	273	60.72	f.26.1.1	43434
2o3iA	405	62.23		
2e3zA	465	62.26		
1xzzA	246	64.65		
1rovA	857	71.90	a.119.1.1,b.12.1.1	97674,97675
2qnuA	226	72.42		
1qxyA	252	73.76	d.127.1.1	96565
1xgsA	295	74.08	a.4.5.25,d.127.1.1	16216,41153
3cpnA	330	75.42		
1bn5	478	75.89		
1ffkB	338	76.31	b.43.3.2	25719
1wgsA	133	76.83	b.34.13.3	114622
2zblA	421	77.77		
2fhdA	153	80.36		
1rzhM	307	81.59	f.26.1.1	98165
1kxgA	152	83.34	b.22.1.1	73145
1uisA	231	84.47	d.22.1.1	99431
1uasA	362	84.97	b.71.1.1,c.1.8.1	88388,88389
1ou8A	111	85.18	b.136.1.1	93543