# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 1.032 b.34.9.1 84964 1g5vA 88 1.083 b.34.9.1 60292 2qqrA 118 2.798 2f5kA 102 3.189 b.34.13.3 132995 2dkoB 103 3.730 1nmeB 92 4.218 2gfaA 119 5.150 b.34.9.1,b.34.9.1 135089,135090 1qtnB 95 5.505 2eqkA 85 6.629 1griA 217 8.333 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 1nmsA 249 8.880 c.17.1.1 85879 1ehsA 48 9.012 g.2.1.1 43998 2qckA 167 12.31 1sc3B 88 12.50 1vqoB 338 13.00 b.43.3.2 120363 2p0pA 126 13.41 1pyoB 105 14.28 1xnzA 264 14.86 d.127.1.1 115673 1danT 80 16.76 b.1.2.1 21953 1vc3B 97 16.78 2fb2A 340 16.80 2ar9A 278 17.02 1yoaA 159 17.91 b.45.1.2 123775 1ibcB 88 19.60 1dxrL 273 19.87 f.26.1.1 43431 2hqxA 246 20.67 b.34.9.1 136675 1eysL 280 21.74 f.26.1.1 43515 1rzhL 281 21.83 f.26.1.1 98164 6prcL 273 23.29 f.26.1.1 43434 2fp3A 316 23.60 1wgsA 133 23.94 b.34.13.3 114622 3cb0A 173 24.15 1i1wA 303 24.30 c.1.8.3 76732 2j01E 206 26.11 1rzhM 307 26.88 f.26.1.1 98165 1fsiA 189 27.57 d.61.1.1 39536 1o0xA 262 31.22 d.127.1.1 80755 2yrvA 117 31.67 1b59A 370 33.21 a.4.5.25,d.127.1.1 16225,41162 2cb9A 244 33.98 1ffkB 338 34.42 b.43.3.2 25719 1wu7A 434 34.87 c.51.1.1,d.104.1.1 121275,121276 2q83A 346 36.51 1q3lA 69 38.12 b.34.13.2 111652 1kjwA 295 39.85 b.34.2.1,c.37.1.1 68643,68644 2o3iA 405 41.49 2e3zA 465 41.68 2i5nL 273 43.47 f.26.1.1 137066 1cp3A 277 43.85 c.17.1.1 30992 1tplA 426 44.04 c.67.1.2 34387 1jxmA 301 45.17 b.34.2.1,c.37.1.1 67420,67421 1uasA 362 46.29 b.71.1.1,c.1.8.1 88388,88389 1ox8A 107 46.45 b.136.1.1 93671 1ou8A 111 46.67 b.136.1.1 93543 1jj2B 337 47.14 b.43.3.2 63086 1ysjA 404 47.18 c.56.5.4,d.58.19.1 123975,123976 1gpc 218 48.85 1z1zA 131 50.76 d.323.1.1 124366 2i5nM 323 51.91 f.26.1.1 137067 1z94A 147 52.01 d.129.3.5 124740 1dk4A 252 52.64 e.7.1.1 42970 2fmlA 273 53.28 a.4.5.68,d.113.1.6 133778,133779 1b85A 351 54.82 a.93.1.1 18581 1qxyA 252 54.85 d.127.1.1 96565 1dz1A 70 55.49 b.34.13.2 37473 1ym0B 27 55.64 2qnuA 226 55.91 2pbnA 313 56.21 4matA 278 57.69 d.127.1.1 41150 2b7yB 51 58.08 2fhdA 153 58.10 1qfmA 710 58.40 b.69.7.1,c.69.1.4 27673,34641 2d5mA 190 58.88 3ct9A 356 62.32 1nycA 111 62.65 b.61.2.2 92336 2q2kA 70 63.04 1b9cA 236 63.54 d.22.1.1 38358 3cewA 125 63.64 1xgsA 295 63.92 a.4.5.25,d.127.1.1 16216,41153 1uisA 231 64.55 d.22.1.1 99431 1ycdA 243 64.66 1wchA 315 65.58 c.45.1.2 114508 1oxdA 227 66.15 d.22.1.1 93687 1sur 215 66.82 2hbaA 52 67.38 1b7yA 350 67.80 d.104.1.1 40776 1h6rA 236 68.64 d.22.1.1 65683 1jj2P 95 74.14 b.34.5.1 63101 1z65A 30 75.14 1gu7A 364 77.16 b.35.1.2,c.2.1.1 83321,83322 2epbA 68 79.96 1g4wR 383 80.15 a.24.11.1,c.45.1.2 16644,32692 2ivwA 113 80.30 1ng2A 193 80.70 b.34.2.1,b.34.2.1 85660,85661 1we9A 64 80.96 g.50.1.2 114549 1v3fA 120 81.38 a.4.5.31 100289 2i8tA 167 81.42 1ok0A 74 84.89 b.5.1.1 93191 2a1hA 365 85.83 e.17.1.1 125997 2rfkB 53 86.30 1pdqA 72 87.96 b.34.13.2 94590 2fdiA 211 88.16 b.82.2.10 133311 1p15A 253 88.24 c.45.1.2 93894 1surA 215 88.29 c.26.2.2 31620 1jmmA 377 88.75 b.30.6.1 71749