# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g5vA 88 0.5464 b.34.9.1 60292 1mhnA 59 0.5640 b.34.9.1 84964 2qqrA 118 3.082 2f5kA 102 3.117 b.34.13.3 132995 2dkoB 103 3.148 1nmeB 92 4.512 2eqkA 85 4.597 1qtnB 95 5.040 2gfaA 119 5.806 b.34.9.1,b.34.9.1 135089,135090 1griA 217 6.997 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 1vqoB 338 7.131 b.43.3.2 120363 1xnzA 264 7.711 d.127.1.1 115673 1nmsA 249 9.301 c.17.1.1 85879 1o0xA 262 10.67 d.127.1.1 80755 1ehsA 48 11.06 g.2.1.1 43998 1danT 80 13.26 b.1.2.1 21953 2qckA 167 13.59 1sc3B 88 14.14 2j01E 206 14.47 1pyoB 105 14.83 1b59A 370 16.76 a.4.5.25,d.127.1.1 16225,41162 2ar9A 278 19.43 1vc3B 97 19.94 1fsiA 189 20.96 d.61.1.1 39536 1yoaA 159 21.43 b.45.1.2 123775 2p0pA 126 21.70 2hqxA 246 22.30 b.34.9.1 136675 1jj2B 337 24.24 b.43.3.2 63086 1wgsA 133 24.41 b.34.13.3 114622 1ibcB 88 24.46 3cb0A 173 24.46 1ffkB 338 24.92 b.43.3.2 25719 1z1zA 131 25.62 d.323.1.1 124366 2fp3A 316 26.09 2q83A 346 29.07 2fb2A 340 30.76 1i1wA 303 33.60 c.1.8.3 76732 1dxrL 273 35.21 f.26.1.1 43431 1xgsA 295 35.84 a.4.5.25,d.127.1.1 16216,41153 1wu7A 434 36.77 c.51.1.1,d.104.1.1 121275,121276 1cp3A 277 37.22 c.17.1.1 30992 2qnuA 226 37.24 4matA 278 39.05 d.127.1.1 41150 1eysL 280 39.80 f.26.1.1 43515 2o3iA 405 42.42 1rzhL 281 43.17 f.26.1.1 98164 2yrvA 117 43.27 3cewA 125 43.59 2cb9A 244 43.89 6prcL 273 45.15 f.26.1.1 43434 1rzhM 307 46.33 f.26.1.1 98165 1q3lA 69 47.86 b.34.13.2 111652 1v3fA 120 50.16 a.4.5.31 100289 1ysjA 404 50.36 c.56.5.4,d.58.19.1 123975,123976 1bn5 478 51.80 1xzzA 246 52.33 1b7yA 350 55.83 d.104.1.1 40776 1dz1A 70 56.13 b.34.13.2 37473 1qxyA 252 56.29 d.127.1.1 96565 1kzlA 208 56.76 b.43.4.3,b.43.4.3 77635,77636 1jxmA 301 56.93 b.34.2.1,c.37.1.1 67420,67421 1b9cA 236 59.78 d.22.1.1 38358 1jj2P 95 61.59 b.34.5.1 63101 1nycA 111 61.66 b.61.2.2 92336 1tplA 426 62.12 c.67.1.2 34387 1uasA 362 62.60 b.71.1.1,c.1.8.1 88388,88389 2e3zA 465 64.91 1rovA 857 67.04 a.119.1.1,b.12.1.1 97674,97675 1uisA 231 67.52 d.22.1.1 99431 2imgA 151 67.62 1gpc 218 68.24 1kkeA 210 71.08 b.83.1.2,b.21.1.2 68669,68670 1z65A 30 73.28 1tr9A 341 74.21 c.1.8.7 112617 1kaoA 167 74.23 c.37.1.8 32014 1kjwA 295 74.46 b.34.2.1,c.37.1.1 68643,68644 2fhdA 153 74.87 2ivwA 113 76.71 2hbaA 52 77.28 1z94A 147 77.37 d.129.3.5 124740 1ym0B 27 78.83 1ou8A 111 79.10 b.136.1.1 93543 1khcA 147 80.68 b.34.9.2 68608 2i5nL 273 80.83 f.26.1.1 137066 1zsyA 357 80.97 1oxdA 227 82.04 d.22.1.1 93687 1wi5A 119 82.06 b.40.4.5 114661 1wchA 315 82.72 c.45.1.2 114508 2f1cX 286 82.98 1b6a 478 83.31 3cpnA 330 83.93 1h6rA 236 84.94 d.22.1.1 65683 1ok0A 74 85.85 b.5.1.1 93191 1izlA 360 87.40 i.5.1.1 76994 2i5nM 323 87.77 f.26.1.1 137067 2d5mA 190 87.79 1t0qB 330 88.43 a.25.1.2 106221 2p9wA 334 89.82