# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	1.780	b.34.9.1	84964
1g5vA	88	1.920	b.34.9.1	60292
2f5kA	102	5.449	b.34.13.3	132995
1nmsA	249	7.860	c.17.1.1	85879
2eqkA	85	8.492		
2qqrA	118	15.45		
1dxrL	273	19.94	f.26.1.1	43431
1rzhL	281	21.29	f.26.1.1	98164
1cp3A	277	22.64	c.17.1.1	30992
6prcL	273	23.63	f.26.1.1	43434
1danT	80	25.49	b.1.2.1	21953
2p0pA	126	28.38		
2i5nL	273	29.92	f.26.1.1	137066
1eysL	280	31.25	f.26.1.1	43515
1rzhM	307	31.38	f.26.1.1	98165
1griA	217	35.12	b.34.2.1,b.34.2.1,d.93.1.1	24531,24532,40473
1wgsA	133	41.55	b.34.13.3	114622
2qckA	167	42.06		
2iwaA	266	43.72		
2gfaA	119	44.71	b.34.9.1,b.34.9.1	135089,135090
1vqoB	338	46.51	b.43.3.2	120363
2axtD	352	70.70		
1kxgA	152	71.42	b.22.1.1	73145
1dz1A	70	71.95	b.34.13.2	37473
1yoaA	159	74.58	b.45.1.2	123775
2dkoB	103	76.54		
1xpkC	388	77.26	c.95.1.2,c.95.1.2	115747,115748
2fhdA	153	79.05		
6prcM	323	82.05	f.26.1.1	43435
1hoe	74	82.63		
1xpmA	396	83.43	c.95.1.2,c.95.1.2	115759,115760
2hqxA	246	84.87	b.34.9.1	136675
1tvzA	388	85.61	c.95.1.2,c.95.1.2	107367,107368