# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2f5kA 102 0.7728 b.34.13.3 132995 1yoaA 159 2.889 b.45.1.2 123775 1dj7B 75 2.954 b.34.4.3 24598 1i0rA 169 3.252 b.45.1.2 61489 1khcA 147 3.426 b.34.9.2 68608 1vie 62 5.194 2bkdN 134 5.904 1vif 62 5.916 2qckA 167 6.272 2gqvA 62 6.982 b.34.4.1 135515 1mhnA 59 7.040 b.34.9.1 84964 2ii1A 301 7.609 1q3lA 69 8.529 b.34.13.2 111652 2rh2A 62 9.830 1g5vA 88 10.32 b.34.9.1 60292 2hqxA 246 11.68 b.34.9.1 136675 2pu9B 74 12.58 2fhdA 153 18.54 2eqjA 66 20.13 2p0kA 212 24.68 1kkhA 317 25.13 d.14.1.5,d.58.26.3 72645,72646 1cskA 71 25.25 b.34.2.1 24513 2a19A 175 25.99 1xi7A 61 26.40 g.3.6.5 115348 1rovA 857 26.91 a.119.1.1,b.12.1.1 97674,97675 2p0pA 126 27.07 1xniA 118 27.13 b.34.9.1,b.34.9.1 115582,115583 3cb0A 173 27.49 1ejeA 192 28.56 b.45.1.2 25757 2pi2A 270 30.76 2f4lA 297 32.19 b.23.3.1 132927 1rz1A 161 32.76 b.45.1.2 98124 1iznB 277 33.39 e.43.1.2 83848 1d1nA 99 33.48 b.43.3.1 25718 2qqrA 118 35.66 1vqoK 132 35.91 b.39.1.1 120372 1a0iA 348 36.84 b.40.4.6,d.142.2.1 25363,41577 2g3rA 123 37.27 b.34.9.1,b.34.9.1 134570,134571 2r6vA 191 38.41 1n7zA 334 38.66 b.127.1.1 85380 1k47A 337 39.12 d.14.1.5,d.58.26.4 72040,72041 1uscA 178 40.39 b.45.1.2 99860 1bdo 80 40.52 2ggrA 76 41.02 2aliA 158 41.55 d.38.1.1 126976 1pdqA 72 41.84 b.34.13.2 94590 1m5q1 130 42.00 2qkiC 343 42.79 1wqwA 235 46.79 b.34.1.1,d.104.1.2 121179,121180 2bivA 243 48.63 b.34.9.3,b.34.9.3 128592,128593 2ecuA 149 49.52 3c4sA 66 49.83 2cu2A 337 49.84 2je6I 251 49.87 2heqA 84 49.91 1wgsA 133 50.33 b.34.13.3 114622 1oz2A 331 50.38 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1pfbA 55 50.82 b.34.13.2 94655 2e5pA 68 51.87 2zgwA 235 53.85 1oi1A 221 53.92 b.34.9.3,b.34.9.3 87037,87038 1lk2B 99 55.73 b.1.1.2 91058 3ceyA 474 57.93 1a0i 348 58.08 2ho9A 167 59.16 1s4cA 155 59.21 b.82.2.7 118860 1s62A 106 60.53 d.212.1.1 118874 2cwzA 141 61.12 d.38.1.7 130961 2aneA 125 62.17 b.122.1.10 127046 2dxuA 235 63.34 2d37A 176 63.48 2os0A 188 64.40 1ny4A 82 64.91 b.40.4.5 92316 2apsA 162 65.02 b.1.8.1 22298 1d2oA 187 65.34 b.3.5.1,b.3.5.1 22625,22626 2o11A 407 65.46 2d5mA 190 65.59 1go3E 187 65.76 b.40.4.5,d.230.1.1 83054,83055 2rovA 117 67.35 2r58A 265 68.51 2crvA 120 68.53 1wfyA 104 69.88 d.15.1.5 114597 1vqoA 240 70.00 b.34.5.3,b.40.4.5 120361,120362 1gcqC 70 70.90 b.34.2.1 60436 2nptA 106 71.66 d.15.2.2 138448 1xpkC 388 73.25 c.95.1.2,c.95.1.2 115747,115748 1g8kA 825 73.66 b.52.2.2,c.81.1.1 26920,35328 2bh0A 208 73.92 1qfmA 710 74.68 b.69.7.1,c.69.1.4 27673,34641 1vbvA 105 76.04 b.34.17.1 119965 1vjvA 415 81.56 d.3.1.9 108632 1lqyA 184 81.79 d.167.1.1 74212 1h6rA 236 82.10 d.22.1.1 65683 2jz2A 66 84.03 3b9tA 484 84.64 1wi0A 113 84.68 d.15.2.2 114657 1ckaA 57 85.41 b.34.2.1 24459 1pieA 419 85.80 d.14.1.5,d.58.26.7 94706,94707 2e7xA 150 86.08 1j5uA 136 87.98 d.208.1.1 71584 2cs7A 55 89.15 d.9.2.1 130748 1qw9A 502 89.91 b.71.1.2,c.1.8.3 96466,96467