Best Alignments for TR429

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2bvrH	5.4727e+00	2bvrH/TR429-2bvrH-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2uw1A	9.1649e+00	2uw1A/TR429-2uw1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ekbB	9.7676e+00	1ekbB/TR429-1ekbB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.47.1.2
2dkoB	1.1630e+01	2dkoB/TR429-2dkoB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j01E	1.2336e+01	2j01E/TR429-2j01E-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pgbB	1.2905e+01	2pgbB/TR429-2pgbB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1nmeB	1.2979e+01	1nmeB/TR429-1nmeB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1nmsA	1.5496e+01	1nmsA/TR429-1nmsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.17.1.1
1sc3B	1.5609e+01	1sc3B/TR429-1sc3B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vqoB	1.6236e+01	1vqoB/TR429-1vqoB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.43.3.2
1kjwA	1.8325e+01	1kjwA/TR429-1kjwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.2.1 c.37.1.1
1mhnA	2.2861e+01	1mhnA/TR429-1mhnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1
1g4wR	2.4135e+01	1g4wR/TR429-1g4wR-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.24.11.1 c.45.1.2
2gm6A	2.4863e+01	2gm6A/TR429-2gm6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vzqH	2.5560e+01	1vzqH/TR429-1vzqH-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1eaxA	2.9979e+01	1eaxA/TR429-1eaxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.47.1.2
1ehsA	3.4212e+01	1ehsA/TR429-1ehsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.2.1.1
2q8oA	3.4691e+01	2q8oA/TR429-2q8oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pyoB	3.5989e+01	1pyoB/TR429-1pyoB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hqxA	3.7788e+01	2hqxA/TR429-2hqxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001